Literature DB >> 18548309

Identification and characterization of new microRNAs from pig.

Jung Kim1, Ik Sang Cho, Jae Sang Hong, Young Ki Choi, Hyunggee Kim, Young Sik Lee.   

Abstract

MicroRNAs (miRNAs) are small regulatory RNAs that direct the posttranscriptional repression of cognate messenger RNAs. Despite increasing evidence for diverse roles of miRNAs in biological processes, little is known about miRNAs in pig. We describe the first experimental identification of porcine miRNAs by sequence analysis of a cDNA library of small RNAs from porcine fibroblast cells. We identified 25 distinct porcine miRNAs, of which 19 are previously unreported, and define 14 new miRNA families in pig. Most of the cloned miRNAs are expressed ubiquitously in all porcine tissues examined, whereas some miRNAs are expressed preferentially in specific tissues. Our results enrich the porcine miRNA database and provide useful information for investigating biological functions of miRNAs in pig.

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Year:  2008        PMID: 18548309     DOI: 10.1007/s00335-008-9111-3

Source DB:  PubMed          Journal:  Mamm Genome        ISSN: 0938-8990            Impact factor:   2.957


  42 in total

1.  A cellular function for the RNA-interference enzyme Dicer in the maturation of the let-7 small temporal RNA.

Authors:  G Hutvágner; J McLachlan; A E Pasquinelli; E Bálint; T Tuschl; P D Zamore
Journal:  Science       Date:  2001-07-12       Impact factor: 47.728

Review 2.  MicroRNAs: small RNAs with a big role in gene regulation.

Authors:  Lin He; Gregory J Hannon
Journal:  Nat Rev Genet       Date:  2004-07       Impact factor: 53.242

3.  MicroRNA genes are transcribed by RNA polymerase II.

Authors:  Yoontae Lee; Minju Kim; Jinju Han; Kyu-Hyun Yeom; Sanghyuk Lee; Sung Hee Baek; V Narry Kim
Journal:  EMBO J       Date:  2004-09-16       Impact factor: 11.598

4.  Dicer functions in RNA interference and in synthesis of small RNA involved in developmental timing in C. elegans.

Authors:  R F Ketting; S E Fischer; E Bernstein; T Sijen; G J Hannon; R H Plasterk
Journal:  Genes Dev       Date:  2001-10-15       Impact factor: 11.361

5.  Phylogenetic shadowing and computational identification of human microRNA genes.

Authors:  Eugene Berezikov; Victor Guryev; José van de Belt; Erno Wienholds; Ronald H A Plasterk; Edwin Cuppen
Journal:  Cell       Date:  2005-01-14       Impact factor: 41.582

6.  Direct comparison of nick-joining activity of the nucleic acid ligases from bacteriophage T4.

Authors:  Desmond R Bullard; Richard P Bowater
Journal:  Biochem J       Date:  2006-08-15       Impact factor: 3.857

7.  A rapid, quantitative assay for direct detection of microRNAs and other small RNAs using splinted ligation.

Authors:  Patricia A Maroney; Sangpen Chamnongpol; Frédéric Souret; Timothy W Nilsen
Journal:  RNA       Date:  2007-04-24       Impact factor: 4.942

8.  Genes and mechanisms related to RNA interference regulate expression of the small temporal RNAs that control C. elegans developmental timing.

Authors:  A Grishok; A E Pasquinelli; D Conte; N Li; S Parrish; I Ha; D L Baillie; A Fire; G Ruvkun; C C Mello
Journal:  Cell       Date:  2001-07-13       Impact factor: 41.582

9.  The nuclear RNase III Drosha initiates microRNA processing.

Authors:  Yoontae Lee; Chiyoung Ahn; Jinju Han; Hyounjeong Choi; Jaekwang Kim; Jeongbin Yim; Junho Lee; Patrick Provost; Olof Rådmark; Sunyoung Kim; V Narry Kim
Journal:  Nature       Date:  2003-09-25       Impact factor: 49.962

10.  A mammalian microRNA expression atlas based on small RNA library sequencing.

Authors:  Pablo Landgraf; Mirabela Rusu; Robert Sheridan; Alain Sewer; Nicola Iovino; Alexei Aravin; Sébastien Pfeffer; Amanda Rice; Alice O Kamphorst; Markus Landthaler; Carolina Lin; Nicholas D Socci; Leandro Hermida; Valerio Fulci; Sabina Chiaretti; Robin Foà; Julia Schliwka; Uta Fuchs; Astrid Novosel; Roman-Ulrich Müller; Bernhard Schermer; Ute Bissels; Jason Inman; Quang Phan; Minchen Chien; David B Weir; Ruchi Choksi; Gabriella De Vita; Daniela Frezzetti; Hans-Ingo Trompeter; Veit Hornung; Grace Teng; Gunther Hartmann; Miklos Palkovits; Roberto Di Lauro; Peter Wernet; Giuseppe Macino; Charles E Rogler; James W Nagle; Jingyue Ju; F Nina Papavasiliou; Thomas Benzing; Peter Lichter; Wayne Tam; Michael J Brownstein; Andreas Bosio; Arndt Borkhardt; James J Russo; Chris Sander; Mihaela Zavolan; Thomas Tuschl
Journal:  Cell       Date:  2007-06-29       Impact factor: 41.582

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  25 in total

1.  Genetics of fat tissue accumulation in pigs: a comparative approach.

Authors:  M Switonski; M Stachowiak; J Cieslak; M Bartz; M Grzes
Journal:  J Appl Genet       Date:  2010       Impact factor: 3.240

2.  Cloning and characterization of microRNAs from porcine skeletal muscle and adipose tissue.

Authors:  Ik Sang Cho; Jung Kim; Hye Youn Seo; Do Hwan Lim; Jae Sang Hong; Young Hee Park; Dae Cheul Park; Ki-Chang Hong; Kwang Youn Whang; Young Sik Lee
Journal:  Mol Biol Rep       Date:  2010-02-24       Impact factor: 2.316

3.  Characterization of microRNAs from sheep (Ovis aries) using computational and experimental analyses.

Authors:  Xihui Sheng; Xuemei Song; Yan Yu; Lili Niu; Shangang Li; Hongbin Li; Caihong Wei; Tao Liu; Li Zhang; Lixin Du
Journal:  Mol Biol Rep       Date:  2010-02-07       Impact factor: 2.316

4.  The characteristics of the porcine (Sus scrofa) liver miRNAome with the use of next generation sequencing.

Authors:  Klaudia Pawlina; Artur Gurgul; Maria Oczkowicz; Monika Bugno-Poniewierska
Journal:  J Appl Genet       Date:  2014-09-18       Impact factor: 3.240

5.  MicroRNAome of porcine pre- and postnatal development.

Authors:  Mingzhou Li; Youlin Xia; Yiren Gu; Kai Zhang; Qiulei Lang; Lei Chen; Jiuqiang Guan; Zonggang Luo; Haosi Chen; Yang Li; Qinghai Li; Xiang Li; An-an Jiang; Surong Shuai; Jinyong Wang; Qi Zhu; Xiaochuan Zhou; Xiaolian Gao; Xuewei Li
Journal:  PLoS One       Date:  2010-07-12       Impact factor: 3.240

6.  Genetic variation of the porcine NR5A1 is associated with meat color.

Authors:  Andreas Görres; Siriluck Ponsuksili; Klaus Wimmers; Eduard Muráni
Journal:  J Appl Genet       Date:  2015-06-09       Impact factor: 3.240

7.  Deep annotation of mouse iso-miR and iso-moR variation.

Authors:  Hongjun Zhou; Mary Luz Arcila; Zhonghan Li; Eun Joo Lee; Christine Henzler; Jingya Liu; Tariq M Rana; Kenneth S Kosik
Journal:  Nucleic Acids Res       Date:  2012-03-19       Impact factor: 16.971

8.  miR-26b promotes granulosa cell apoptosis by targeting ATM during follicular atresia in porcine ovary.

Authors:  Fei Lin; Ran Li; Zeng Xiang Pan; Bo Zhou; De Bing Yu; Xu Guang Wang; Xue Shan Ma; Jing Han; Ming Shen; Hong Lin Liu
Journal:  PLoS One       Date:  2012-06-21       Impact factor: 3.240

9.  MicroRNA transcriptome profiles during swine skeletal muscle development.

Authors:  Tara G McDaneld; Timothy P L Smith; Matthew E Doumit; Jeremy R Miles; Luiz L Coutinho; Tad S Sonstegard; Lakshmi K Matukumalli; Dan J Nonneman; Ralph T Wiedmann
Journal:  BMC Genomics       Date:  2009-02-10       Impact factor: 3.969

10.  A Review of Computational Tools in microRNA Discovery.

Authors:  Clarissa P C Gomes; Ji-Hoon Cho; Leroy Hood; Octávio L Franco; Rinaldo W Pereira; Kai Wang
Journal:  Front Genet       Date:  2013-05-15       Impact factor: 4.599

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