Literature DB >> 20179342

Getting the best out of long-wavelength X-rays: de novo chlorine/sulfur SAD phasing of a structural protein from ATV.

Adeline Goulet1, Gisle Vestergaard, Catarina Felisberto-Rodrigues, Valérie Campanacci, Roger A Garrett, Christian Cambillau, Miguel Ortiz-Lombardía.   

Abstract

The structure of a 14 kDa structural protein from Acidianus two-tailed virus (ATV) was solved by single-wavelength anomalous diffraction (SAD) phasing using X-ray data collected at 2.0 A wavelength. Although the anomalous signal from methionine sulfurs was expected to suffice to solve the structure, one chloride ion turned out to be essential to achieve phasing. The minimal data requirements and the relative contributions of the Cl and S atoms to phasing are discussed. This work supports the feasibility of a systematic approach for the solution of protein crystal structures by SAD based on intrinsic protein light atoms along with associated chloride ions from the solvent. In such cases, data collection at long wavelengths may be a time-efficient alternative to selenomethionine substitution and heavy-atom derivatization.

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Year:  2010        PMID: 20179342     DOI: 10.1107/S0907444909051798

Source DB:  PubMed          Journal:  Acta Crystallogr D Biol Crystallogr        ISSN: 0907-4449


  14 in total

1.  Unification of the globally distributed spindle-shaped viruses of the Archaea.

Authors:  Mart Krupovic; Emmanuelle R J Quemin; Dennis H Bamford; Patrick Forterre; David Prangishvili
Journal:  J Virol       Date:  2013-12-11       Impact factor: 5.103

Review 2.  Large Tailed Spindle Viruses of Archaea: a New Way of Doing Viral Business.

Authors:  Rebecca Hochstein; Daniel Bollschweiler; Harald Engelhardt; C Martin Lawrence; Mark Young
Journal:  J Virol       Date:  2015-06-17       Impact factor: 5.103

Review 3.  Viruses of archaea: Structural, functional, environmental and evolutionary genomics.

Authors:  Mart Krupovic; Virginija Cvirkaite-Krupovic; Jaime Iranzo; David Prangishvili; Eugene V Koonin
Journal:  Virus Res       Date:  2017-11-22       Impact factor: 3.303

Review 4.  The enigmatic archaeal virosphere.

Authors:  David Prangishvili; Dennis H Bamford; Patrick Forterre; Jaime Iranzo; Eugene V Koonin; Mart Krupovic
Journal:  Nat Rev Microbiol       Date:  2017-11-10       Impact factor: 60.633

5.  Chaperone role for proteins p618 and p892 in the extracellular tail development of Acidianus two-tailed virus.

Authors:  Urte Scheele; Susanne Erdmann; Ernst J Ungewickell; Catarina Felisberto-Rodrigues; Miguel Ortiz-Lombardía; Roger A Garrett
Journal:  J Virol       Date:  2011-03-02       Impact factor: 5.103

6.  Sulfolobus Spindle-Shaped Virus 1 Contains Glycosylated Capsid Proteins, a Cellular Chromatin Protein, and Host-Derived Lipids.

Authors:  Emmanuelle R J Quemin; Maija K Pietilä; Hanna M Oksanen; Patrick Forterre; W Irene C Rijpstra; Stefan Schouten; Dennis H Bamford; David Prangishvili; Mart Krupovic
Journal:  J Virol       Date:  2015-09-09       Impact factor: 5.103

7.  Structural studies of Acidianus tailed spindle virus reveal a structural paradigm used in the assembly of spindle-shaped viruses.

Authors:  Rebecca Hochstein; Daniel Bollschweiler; Sanjay Dharmavaram; Nathanael G Lintner; Jürgen M Plitzko; Robijn Bruinsma; Harald Engelhardt; Mark J Young; William S Klug; C Martin Lawrence
Journal:  Proc Natl Acad Sci U S A       Date:  2018-02-12       Impact factor: 11.205

8.  S-SAD phasing study of death receptor 6 and its solution conformation revealed by SAXS.

Authors:  Heng Ru; Lixia Zhao; Wei Ding; Lianying Jiao; Neil Shaw; Wenguang Liang; Liguo Zhang; Li-Wei Hung; Naohiro Matsugaki; Soichi Wakatsuki; Zhi-Jie Liu
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2012-04-17

9.  Crystal structure of ATV(ORF273), a new fold for a thermo- and acido-stable protein from the Acidianus two-tailed virus.

Authors:  Catarina Felisberto-Rodrigues; Stéphanie Blangy; Adeline Goulet; Gisle Vestergaard; Christian Cambillau; Roger A Garrett; Miguel Ortiz-Lombardía
Journal:  PLoS One       Date:  2012-10-08       Impact factor: 3.240

10.  Spindle-shaped archaeal viruses evolved from rod-shaped ancestors to package a larger genome.

Authors:  Fengbin Wang; Virginija Cvirkaite-Krupovic; Matthijn Vos; Leticia C Beltran; Mark A B Kreutzberger; Jean-Marie Winter; Zhangli Su; Jun Liu; Stefan Schouten; Mart Krupovic; Edward H Egelman
Journal:  Cell       Date:  2022-03-23       Impact factor: 66.850

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