Literature DB >> 2017376

Identification of novel single-stranded d(TC)n binding proteins in several mammalian species.

H A Yee1, A K Wong, J H van de Sande, J B Rattner.   

Abstract

A group of single-stranded d(TC)n specific binding proteins has been detected in the nuclear extracts of several mammalian species that included mouse, human, African green monkey, chimpanzee, and Chinese muntjac. Southwestern analysis of 500 mM KCI nuclear extracts has shown that these proteins cluster in a similar size range, 55.5 to 57 kD. An additional 54 kD band was present for the three primate species examined. The single-stranded d(TC)n binding activity was confirmed with bandshift assay. Specific double-stranded binding activity for duplex d(TC)n.d(GA)n or single-stranded d(GA)n was not detected. The conservation of size distribution and d(TC)n-binding activity across the species examined indicates that this class of single-stranded binding proteins may have an important biological function in vivo.

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Year:  1991        PMID: 2017376      PMCID: PMC333737          DOI: 10.1093/nar/19.4.949

Source DB:  PubMed          Journal:  Nucleic Acids Res        ISSN: 0305-1048            Impact factor:   16.971


  38 in total

1.  Distribution of CT-rich tracts is conserved in vertebrate chromosomes.

Authors:  A K Wong; H A Yee; J H van de Sande; J B Rattner
Journal:  Chromosoma       Date:  1990-09       Impact factor: 4.316

2.  The ubiquitous potential Z-forming sequence of eucaryotes, (dT-dG)n . (dC-dA)n, is not detectable in the genomes of eubacteria, archaebacteria, or mitochondria.

Authors:  D S Gross; W T Garrard
Journal:  Mol Cell Biol       Date:  1986-08       Impact factor: 4.272

3.  Unusual sequence element found at the end of an amplicon.

Authors:  N Baran; A Lapidot; H Manor
Journal:  Mol Cell Biol       Date:  1987-07       Impact factor: 4.272

4.  A mammalian high mobility group protein recognizes any stretch of six A.T base pairs in duplex DNA.

Authors:  M J Solomon; F Strauss; A Varshavsky
Journal:  Proc Natl Acad Sci U S A       Date:  1986-03       Impact factor: 11.205

Review 5.  Single-stranded DNA binding proteins required for DNA replication.

Authors:  J W Chase; K R Williams
Journal:  Annu Rev Biochem       Date:  1986       Impact factor: 23.643

6.  5'-32P labeling of RNA and DNA restriction fragments.

Authors:  G Chaconas; J H van de Sande
Journal:  Methods Enzymol       Date:  1980       Impact factor: 1.600

7.  Accurate transcription initiation by RNA polymerase II in a soluble extract from isolated mammalian nuclei.

Authors:  J D Dignam; R M Lebovitz; R G Roeder
Journal:  Nucleic Acids Res       Date:  1983-03-11       Impact factor: 16.971

8.  Photochemical demonstration of stacked C.C+ base pairs in a novel DNA secondary structure.

Authors:  D M Brown; D M Gray; M H Patrick; R L Ratliff
Journal:  Biochemistry       Date:  1985-03-26       Impact factor: 3.162

9.  Complexes formed by (pyrimidine)n . (purine)n DNAs on lowering the pH are three-stranded.

Authors:  J S Lee; D A Johnson; A R Morgan
Journal:  Nucleic Acids Res       Date:  1979-07-11       Impact factor: 16.971

10.  A monoclonal antibody to triplex DNA binds to eucaryotic chromosomes.

Authors:  J S Lee; G D Burkholder; L J Latimer; B L Haug; R P Braun
Journal:  Nucleic Acids Res       Date:  1987-02-11       Impact factor: 16.971

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  16 in total

Review 1.  On the potential of simple repetitive DNA for fingerprinting in clinical, forensic, and evolutionary dynamic studies.

Authors:  J T Epplen; G Melmer; P Schmidt; L Roewer; J Hundrieser; C Epplen; J Buitkamp
Journal:  Clin Investig       Date:  1992-11

2.  A single-stranded DNA binding protein from mouse tumor cells specifically recognizes the C-rich strand of the (AGG:CCT)n repeats that can alter DNA conformation.

Authors:  T Muraiso; S Nomoto; H Yamazaki; Y Mishima; R Kominami
Journal:  Nucleic Acids Res       Date:  1992-12-25       Impact factor: 16.971

Review 3.  Revisiting junk DNA.

Authors:  E Zuckerkandl
Journal:  J Mol Evol       Date:  1992-03       Impact factor: 2.395

4.  Minisatellite binding protein Msbp-1 is a sequence-specific single-stranded DNA-binding protein.

Authors:  A Collick; M G Dunn; A J Jeffreys
Journal:  Nucleic Acids Res       Date:  1991-12-11       Impact factor: 16.971

5.  Single-strand-DNA-binding factors specifically recognize the pyrimidine element in the chick alpha2(I) collagen gene promoter.

Authors:  D Bayarsaihan; L N Lukens
Journal:  Biochem J       Date:  1996-02-15       Impact factor: 3.857

6.  In vitro transcription of a poly(dA) x poly(dT)-containing sequence is inhibited by interaction between the template and its transcripts.

Authors:  R Kiyama; M Oishi
Journal:  Nucleic Acids Res       Date:  1996-11-15       Impact factor: 16.971

7.  The effect of zinc on the secondary structure of d(GA.TC)n DNA sequences of different length: a model for the formation *H-DNA.

Authors:  A Martínez-Balbás; F Azorín
Journal:  Nucleic Acids Res       Date:  1993-06-11       Impact factor: 16.971

8.  The yeast protein encoded by PUB1 binds T-rich single stranded DNA.

Authors:  M Cockell; S Frutiger; G J Hughes; S M Gasser
Journal:  Nucleic Acids Res       Date:  1994-01-11       Impact factor: 16.971

9.  Cloning and characterization of a single-stranded DNA binding protein that specifically recognizes deoxycytidine stretch.

Authors:  K Ito; K Sato; H Endo
Journal:  Nucleic Acids Res       Date:  1994-01-11       Impact factor: 16.971

10.  NMR studies of pH-dependent conformational polymorphism of alternating (C-T)n sequences.

Authors:  T N Jaishree; A H Wang
Journal:  Nucleic Acids Res       Date:  1993-08-11       Impact factor: 16.971

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