Literature DB >> 20168086

tRNA insulator function: insight into inheritance of transcription states?

Jacob G Kirkland1, Rohinton T Kamakaka.   

Abstract

DNA in eukaryotes is invariably present as a complex with histone and non-histone proteins called chromatin. These proteins play an important role in the proper regulation of genes during development and differentiation. Transcription factors and the covalent modifications of DNA, histone and non-histone proteins establish an epigenetic state that is heritable and which does not involve a change in genotype. The heritability of transcription states through cell division brings up specific questions: How are epigenetic marks established and re-established in the daughter cells following DNA replication and mitosis? In this article we explore what is known of the cell cycle dependence of epigenetic inheritance with particular emphasis on yeast loci and discuss the role of specific proteins responsible for the establishment and maintenance of these states.

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Year:  2010        PMID: 20168086      PMCID: PMC3465082          DOI: 10.4161/epi.5.2.10775

Source DB:  PubMed          Journal:  Epigenetics        ISSN: 1559-2294            Impact factor:   4.528


  34 in total

Review 1.  Split decision: what happens to nucleosomes during DNA replication?

Authors:  Anthony T Annunziato
Journal:  J Biol Chem       Date:  2005-01-21       Impact factor: 5.157

Review 2.  Chromatin-remodelling factors and the maintenance of transcriptional states through DNA replication.

Authors:  Sofia Aligianni; Patrick Varga-Weisz
Journal:  Biochem Soc Symp       Date:  2006

Review 3.  Chromatin insulators.

Authors:  Lourdes Valenzuela; Rohinton T Kamakaka
Journal:  Annu Rev Genet       Date:  2006       Impact factor: 16.830

4.  Taking it off: regulation of H3 K56 acetylation by Hst3 and Hst4.

Authors:  Kyle M Miller; Nancy L Maas; David P Toczyski
Journal:  Cell Cycle       Date:  2006-11-15       Impact factor: 4.534

5.  SWI/SNF is required for transcriptional memory at the yeast GAL gene cluster.

Authors:  Sharmistha Kundu; Peter J Horn; Craig L Peterson
Journal:  Genes Dev       Date:  2007-04-15       Impact factor: 11.361

Review 6.  The nuclear envelope and transcriptional control.

Authors:  Asifa Akhtar; Susan M Gasser
Journal:  Nat Rev Genet       Date:  2007-06-05       Impact factor: 53.242

Review 7.  Genome integrity: a HAT needs a chaperone.

Authors:  Craig L Peterson
Journal:  Curr Biol       Date:  2007-05-01       Impact factor: 10.834

8.  Analyses of SUM1-1-mediated long-range repression.

Authors:  Lourdes Valenzuela; Sunil Gangadharan; Rohinton T Kamakaka
Journal:  Genetics       Date:  2005-11-04       Impact factor: 4.562

Review 9.  The function of telomere clustering in yeast: the circe effect.

Authors:  S M Gasser; F Hediger; A Taddei; F R Neumann; M R Gartenberg
Journal:  Cold Spring Harb Symp Quant Biol       Date:  2004

10.  H2A.Z-mediated localization of genes at the nuclear periphery confers epigenetic memory of previous transcriptional state.

Authors:  Donna Garvey Brickner; Ivelisse Cajigas; Yvonne Fondufe-Mittendorf; Sara Ahmed; Pei-Chih Lee; Jonathan Widom; Jason H Brickner
Journal:  PLoS Biol       Date:  2007-04       Impact factor: 8.029

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  4 in total

1.  tRNA genes protect a reporter gene from epigenetic silencing in mouse cells.

Authors:  Thomas Ebersole; Jung-Hyun Kim; Alexander Samoshkin; Natalay Kouprina; Adam Pavlicek; Robert J White; Vladimir Larionov
Journal:  Cell Cycle       Date:  2011-08-15       Impact factor: 4.534

2.  Silencing near tRNA genes is nucleosome-mediated and distinct from boundary element function.

Authors:  Paul D Good; Ann Kendall; James Ignatz-Hoover; Erin L Miller; Dave A Pai; Sara R Rivera; Brian Carrick; David R Engelke
Journal:  Gene       Date:  2013-05-23       Impact factor: 3.688

3.  A novel tRNA variable number tandem repeat at human chromosome 1q23.3 is implicated as a boundary element based on conservation of a CTCF motif in mouse.

Authors:  Emily M Darrow; Brian P Chadwick
Journal:  Nucleic Acids Res       Date:  2014-04-21       Impact factor: 16.971

4.  Alanine tRNAs Translate Environment Into Behavior in Caenorhabditis elegans.

Authors:  Diana Andrea Fernandes De Abreu; Thalia Salinas-Giegé; Laurence Drouard; Jean-Jacques Remy
Journal:  Front Cell Dev Biol       Date:  2020-10-30
  4 in total

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