Literature DB >> 20167275

Analyzing the branch migration activities of eukaryotic proteins.

Matthew J Rossi1, Olga M Mazina, Dmitry V Bugreev, Alexander V Mazin.   

Abstract

The Holliday junction is a key intermediate of DNA repair, recombination, and replication. Branch migration of Holliday junctions is a process in which one DNA strand is progressively exchanged for another. Branch migration of Holliday junctions may serve several important functions such as affecting the length of genetic information transferred between homologous chromosomes during meiosis, restarting stalled replication forks, and ensuring the faithful repair of double strand DNA breaks by homologous recombination. Several proteins that promote branch migration of Holliday junctions have been recently identified. These proteins, which function during DNA replication and repair, possess the ability to bind Holliday junctions and other branched DNA structures and drive their branch migration by translocating along DNA in an ATPase-dependent manner. Here, we describe methods employing a wide range of DNA substrates for studying proteins that catalyze branch migration of Holliday junctions. Copyright (c) 2010 Elsevier Inc. All rights reserved.

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Year:  2010        PMID: 20167275      PMCID: PMC2900513          DOI: 10.1016/j.ymeth.2010.02.010

Source DB:  PubMed          Journal:  Methods        ISSN: 1046-2023            Impact factor:   3.608


  33 in total

1.  The Bloom's syndrome gene product promotes branch migration of holliday junctions.

Authors:  J K Karow; A Constantinou; J L Li; S C West; I D Hickson
Journal:  Proc Natl Acad Sci U S A       Date:  2000-06-06       Impact factor: 11.205

Review 2.  RecQ family helicases: roles in cancer and aging.

Authors:  J K Karow; L Wu; I D Hickson
Journal:  Curr Opin Genet Dev       Date:  2000-02       Impact factor: 5.578

Review 3.  Replication fork pausing and recombination or "gimme a break".

Authors:  R Rothstein; B Michel; S Gangloff
Journal:  Genes Dev       Date:  2000-01-01       Impact factor: 11.361

Review 4.  Processing of recombination intermediates by the RuvABC proteins.

Authors:  S C West
Journal:  Annu Rev Genet       Date:  1997       Impact factor: 16.830

5.  Ethanol precipitation of DNA with linear polyacrylamide as carrier.

Authors:  C Gaillard; F Strauss
Journal:  Nucleic Acids Res       Date:  1990-01-25       Impact factor: 16.971

6.  Formation of a single base mismatch impedes spontaneous DNA branch migration.

Authors:  I G Panyutin; P Hsieh
Journal:  J Mol Biol       Date:  1993-03-20       Impact factor: 5.469

7.  Kinetic theory of ATP-driven translocases on one-dimensional polymer lattices.

Authors:  M C Young; S B Kuhl; P H von Hippel
Journal:  J Mol Biol       Date:  1994-02-04       Impact factor: 5.469

8.  The kinetics of spontaneous DNA branch migration.

Authors:  I G Panyutin; P Hsieh
Journal:  Proc Natl Acad Sci U S A       Date:  1994-03-15       Impact factor: 11.205

9.  RECQ1 possesses DNA branch migration activity.

Authors:  Dmitry V Bugreev; Robert M Brosh; Alexander V Mazin
Journal:  J Biol Chem       Date:  2008-05-21       Impact factor: 5.157

10.  Dissociation of synthetic Holliday junctions by E. coli RecG protein.

Authors:  R G Lloyd; G J Sharples
Journal:  EMBO J       Date:  1993-01       Impact factor: 11.598

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  12 in total

1.  Polarity and bypass of DNA heterology during branch migration of Holliday junctions by human RAD54, BLM, and RECQ1 proteins.

Authors:  Olga M Mazina; Matthew J Rossi; Julianna S Deakyne; Fei Huang; Alexander V Mazin
Journal:  J Biol Chem       Date:  2012-02-22       Impact factor: 5.157

2.  Identification of specific inhibitors of human RAD51 recombinase using high-throughput screening.

Authors:  Fei Huang; Nuzhat A Motlekar; Chelsea M Burgwin; Andrew D Napper; Scott L Diamond; Alexander V Mazin
Journal:  ACS Chem Biol       Date:  2011-03-23       Impact factor: 5.100

3.  The RecA/RAD51 protein drives migration of Holliday junctions via polymerization on DNA.

Authors:  Matthew J Rossi; Olga M Mazina; Dmitry V Bugreev; Alexander V Mazin
Journal:  Proc Natl Acad Sci U S A       Date:  2011-04-04       Impact factor: 11.205

4.  Rad52 Inverse Strand Exchange Drives RNA-Templated DNA Double-Strand Break Repair.

Authors:  Olga M Mazina; Havva Keskin; Kritika Hanamshet; Francesca Storici; Alexander V Mazin
Journal:  Mol Cell       Date:  2017-06-08       Impact factor: 17.970

5.  Analysis of the activities of RAD54, a SWI2/SNF2 protein, using a specific small-molecule inhibitor.

Authors:  Julianna S Deakyne; Fei Huang; Joseph Negri; Nicola Tolliday; Simon Cocklin; Alexander V Mazin
Journal:  J Biol Chem       Date:  2013-09-16       Impact factor: 5.157

6.  Reconstituting the 4-Strand DNA Strand Exchange.

Authors:  Olga M Mazina; Alexander V Mazin
Journal:  Methods Enzymol       Date:  2018-02-01       Impact factor: 1.600

7.  A high-throughput chemical screen with FDA approved drugs reveals that the antihypertensive drug Spironolactone impairs cancer cell survival by inhibiting homology directed repair.

Authors:  Or David Shahar; Alkmini Kalousi; Lital Eini; Benoit Fisher; Amelie Weiss; Jonatan Darr; Olga Mazina; Shay Bramson; Martin Kupiec; Amir Eden; Eran Meshorer; Alexander V Mazin; Laurent Brino; Michal Goldberg; Evi Soutoglou
Journal:  Nucleic Acids Res       Date:  2014-03-25       Impact factor: 16.971

8.  Branch Migration Activity of Rad54 Protein.

Authors:  Olga M Mazina; Alexander V Mazin
Journal:  Methods Mol Biol       Date:  2021

9.  HOP2-MND1 modulates RAD51 binding to nucleotides and DNA.

Authors:  Dmitry V Bugreev; Fei Huang; Olga M Mazina; Roberto J Pezza; Oleg N Voloshin; R Daniel Camerini-Otero; Alexander V Mazin
Journal:  Nat Commun       Date:  2014-06-19       Impact factor: 14.919

10.  Replication protein A binds RNA and promotes R-loop formation.

Authors:  Olga M Mazina; Srinivas Somarowthu; Lyudmila Y Kadyrova; Andrey G Baranovskiy; Tahir H Tahirov; Farid A Kadyrov; Alexander V Mazin
Journal:  J Biol Chem       Date:  2020-08-12       Impact factor: 5.157

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