Literature DB >> 29458763

Reconstituting the 4-Strand DNA Strand Exchange.

Olga M Mazina1, Alexander V Mazin2.   

Abstract

Proteins of the Rad51 family play a key role in homologous recombination by carrying out DNA strand exchange. Here, we present the methodology and the protocols for the 4-strand exchange between gapped circular DNA and homologous linear duplex DNA promoted by human Rad51 and Escherichia coli RecA orthologs. This reaction includes formation of joint molecules and their extension by branch migration in a polar manner. The presented methodology may be used for reconstitution of the medial-to-late stages of homologous recombination in vitro as well as for investigation of the mechanisms of branch migration by helicase-like proteins, e.g., Rad54, BLM, or RecQ1.
© 2018 Elsevier Inc. All rights reserved.

Entities:  

Keywords:  Branch migration; DNA double-strand break repair; DNA strand exchange; Holliday junctions; Homologous recombination; Joint molecules

Mesh:

Substances:

Year:  2018        PMID: 29458763      PMCID: PMC6070308          DOI: 10.1016/bs.mie.2017.11.013

Source DB:  PubMed          Journal:  Methods Enzymol        ISSN: 0076-6879            Impact factor:   1.600


  14 in total

1.  RecA protein promotes the regression of stalled replication forks in vitro.

Authors:  M E Robu; R B Inman; M M Cox
Journal:  Proc Natl Acad Sci U S A       Date:  2001-07-17       Impact factor: 11.205

2.  ATP hydrolysis and the displaced strand are two factors that determine the polarity of RecA-promoted DNA strand exchange.

Authors:  B B Konforti; R W Davis
Journal:  J Mol Biol       Date:  1992-09-05       Impact factor: 5.469

3.  Polarity and bypass of DNA heterology during branch migration of Holliday junctions by human RAD54, BLM, and RECQ1 proteins.

Authors:  Olga M Mazina; Matthew J Rossi; Julianna S Deakyne; Fei Huang; Alexander V Mazin
Journal:  J Biol Chem       Date:  2012-02-22       Impact factor: 5.157

4.  The fission yeast meiosis-specific Dmc1 recombinase mediates formation and branch migration of Holliday junctions by preferentially promoting strand exchange in a direction opposite to that of Rad51.

Authors:  Yasuto Murayama; Yasuhiro Tsutsui; Hiroshi Iwasaki
Journal:  Genes Dev       Date:  2011-03-01       Impact factor: 11.361

5.  The RecA/RAD51 protein drives migration of Holliday junctions via polymerization on DNA.

Authors:  Matthew J Rossi; Olga M Mazina; Dmitry V Bugreev; Alexander V Mazin
Journal:  Proc Natl Acad Sci U S A       Date:  2011-04-04       Impact factor: 11.205

6.  Basis for avid homologous DNA strand exchange by human Rad51 and RPA.

Authors:  S Sigurdsson; K Trujillo; B Song; S Stratton; P Sung
Journal:  J Biol Chem       Date:  2000-12-20       Impact factor: 5.157

7.  Recombinant replication protein A: expression, complex formation, and functional characterization.

Authors:  L A Henricksen; C B Umbricht; M S Wold
Journal:  J Biol Chem       Date:  1994-04-15       Impact factor: 5.157

8.  Human Rad54 protein stimulates DNA strand exchange activity of hRad51 protein in the presence of Ca2+.

Authors:  Olga M Mazina; Alexander V Mazin
Journal:  J Biol Chem       Date:  2004-10-04       Impact factor: 5.157

Review 9.  An Overview of the Molecular Mechanisms of Recombinational DNA Repair.

Authors:  Stephen C Kowalczykowski
Journal:  Cold Spring Harb Perspect Biol       Date:  2015-11-02       Impact factor: 10.005

10.  Analyzing the branch migration activities of eukaryotic proteins.

Authors:  Matthew J Rossi; Olga M Mazina; Dmitry V Bugreev; Alexander V Mazin
Journal:  Methods       Date:  2010-02-16       Impact factor: 3.608

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  1 in total

1.  Branch Migration Activity of Rad54 Protein.

Authors:  Olga M Mazina; Alexander V Mazin
Journal:  Methods Mol Biol       Date:  2021
  1 in total

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