Literature DB >> 20161207

Measuring the nucleation rate of Lysozyme using microfluidics.

Seila Selimović1, Yanwei Jia, Seth Fraden.   

Abstract

We employ the PhaseChip, a (poly)dimethylsiloxane (PDMS) microfluidic device, for statistical studies of protein crystal nucleation. The PhaseChip is designed to decouple nucleation and growth of protein crystals and so improve their yield and quality. Two layers of fluidic channels containing salt reservoirs and nanoliter-sized wells for protein drops in oil are separated by a thin PDMS membrane, which is permeable to water, but not to salt or macromolecules such as protein. We reversibly vary the supersaturation of protein inside the stored droplets by controlling the chemical potential of the reservoir. Lysozyme in the presence of sodium chloride is used as a model system. We determine the crystal nucleation rate as a function of protein supersaturation by counting the number of crystal nuclei per droplet, as demonstrated by Galkin and Vekilov.1.

Entities:  

Year:  2009        PMID: 20161207      PMCID: PMC2714170          DOI: 10.1021/cg800990k

Source DB:  PubMed          Journal:  Cryst Growth Des        ISSN: 1528-7483            Impact factor:   4.076


  8 in total

Review 1.  Nucleation of protein crystals.

Authors:  Juan Manuel García-Ruiz
Journal:  J Struct Biol       Date:  2003-04       Impact factor: 2.867

Review 2.  Microfluidics in structural biology: smaller, faster em leader better.

Authors:  Carl Hansen; Stephen R Quake
Journal:  Curr Opin Struct Biol       Date:  2003-10       Impact factor: 6.809

3.  Curvature-dependent surface tension of a growing droplet.

Authors:  Michael P Moody; Phil Attard
Journal:  Phys Rev Lett       Date:  2003-08-01       Impact factor: 9.161

4.  Surface tension of a Lennard-Jones liquid under supersaturation.

Authors:  Songnian He; Phil Attard
Journal:  Phys Chem Chem Phys       Date:  2005-07-04       Impact factor: 3.676

5.  Nanoliter microfluidic hybrid method for simultaneous screening and optimization validated with crystallization of membrane proteins.

Authors:  Liang Li; Debarshi Mustafi; Qiang Fu; Valentina Tereshko; Delai L Chen; Joshua D Tice; Rustem F Ismagilov
Journal:  Proc Natl Acad Sci U S A       Date:  2006-12-11       Impact factor: 11.205

6.  Control and measurement of the phase behavior of aqueous solutions using microfluidics.

Authors:  Jung-Uk Shim; Galder Cristobal; Darren R Link; Todd Thorsen; Yanwei Jia; Katie Piattelli; Seth Fraden
Journal:  J Am Chem Soc       Date:  2007-06-20       Impact factor: 15.419

7.  Using Microfluidics to Decouple Nucleation and Growth of Protein Crystals.

Authors:  Jung-Uk Shim; Galder Cristobal; Darren R Link; Todd Thorsen; Seth Fraden
Journal:  Cryst Growth Des       Date:  2007       Impact factor: 4.076

8.  Repartitioning of NaCl and protein impurities in lysozyme crystallization.

Authors:  P G Vekilov; B R Monaco; B R Thomas; V Stojanoff; F Rosenberger
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  1996-07-01
  8 in total
  7 in total

1.  Probabilistic approach to lysozyme crystal nucleation kinetics.

Authors:  Ivaylo L Dimitrov; Feyzim V Hodzhaoglu; Dobryana P Koleva
Journal:  J Biol Phys       Date:  2015-03-08       Impact factor: 1.365

2.  Parallel temperature-dependent microrheological measurements in a microfluidic chip.

Authors:  Lilian Lam Josephson; William J Galush; Eric M Furst
Journal:  Biomicrofluidics       Date:  2016-06-14       Impact factor: 2.800

3.  Generating nonlinear concentration gradients in microfluidic devices for cell studies.

Authors:  Šeila Selimović; Woo Young Sim; Sang Bok Kim; Yun Ho Jang; Won Gu Lee; Masoud Khabiry; Hojae Bae; Sachin Jambovane; Jong Wook Hong; Ali Khademhosseini
Journal:  Anal Chem       Date:  2011-02-23       Impact factor: 6.986

4.  Kinetic factors may reshape the dependence of crystal nucleation rate on temperature in protein bulk solution.

Authors:  Ivaylo L Dimitrov
Journal:  J Biol Phys       Date:  2020-10-16       Impact factor: 1.365

5.  A Stochastic Model for Nucleation Kinetics Determination in Droplet-Based Microfluidic Systems.

Authors:  Limay Goh; Kejia Chen; Venkateswarlu Bhamidi; Guangwen He; Nicholas C S Kee; Paul J A Kenis; Charles F Zukoski; Richard D Braatz
Journal:  Cryst Growth Des       Date:  2010-05-10       Impact factor: 4.076

6.  Microfluidic Platform with Serpentine Geometry Providing Chaotic Mixing in Induction Time Experiments.

Authors:  Sameer D Shingte; Olav Altenburg; Peter J T Verheijen; Herman J M Kramer; Huseyin Burak Eral
Journal:  Cryst Growth Des       Date:  2022-06-09       Impact factor: 4.010

7.  Do protein crystals nucleate within dense liquid clusters?

Authors:  Dominique Maes; Maria A Vorontsova; Marco A C Potenza; Tiziano Sanvito; Mike Sleutel; Marzio Giglio; Peter G Vekilov
Journal:  Acta Crystallogr F Struct Biol Commun       Date:  2015-06-27       Impact factor: 1.056

  7 in total

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