Literature DB >> 20160946

Characterization of protein secondary structure from NMR chemical shifts.

Steven P Mielke1, V V Krishnan.   

Abstract

Entities:  

Year:  2009        PMID： 20160946      PMCID： PMC2766081          DOI： 10.1016/j.pnmrs.2008.06.002

Source DB:  PubMed          Journal:  Prog Nucl Magn Reson Spectrosc        ISSN： 0079-6565            Impact factor:   9.795


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  171 in total

Review 1.  The direct determination of protein structure by NMR without assignment.

Authors:  R Andrew Atkinson; Vladimír Saudek
Journal:  FEBS Lett       Date:  2002-01-02       Impact factor: 4.124

2.  Q9, a content-balancing accuracy index to evaluate algorithms of protein secondary structure prediction.

Authors:  Chun-Ting Zhang; Ren Zhang
Journal:  Int J Biochem Cell Biol       Date:  2003-08       Impact factor: 5.085

3.  Random coil proton chemical shifts of deoxyribonucleic acids.

Authors:  Sik Lok Lam; Lai Nang Ip; Xiaodai Cui; Cheuk Nang Ho
Journal:  J Biomol NMR       Date:  2002-12       Impact factor: 2.835

4.  Investigation of the neighboring residue effects on protein chemical shifts.

Authors:  Yunjun Wang; Oleg Jardetzky
Journal:  J Am Chem Soc       Date:  2002-11-27       Impact factor: 15.419

5.  A weighting method for predicting protein structural class from amino acid composition.

Authors:  G Zhou; X Xu; C T Zhang
Journal:  Eur J Biochem       Date:  1992-12-15

6.  Protein structure determination from NMR chemical shifts.

Authors:  Andrea Cavalli; Xavier Salvatella; Christopher M Dobson; Michele Vendruscolo
Journal:  Proc Natl Acad Sci U S A       Date:  2007-05-29       Impact factor: 11.205

7.  An optimization approach to predicting protein structural class from amino acid composition.

Authors:  C T Zhang; K C Chou
Journal:  Protein Sci       Date:  1992-03       Impact factor: 6.725

8.  Protein backbone angle restraints from searching a database for chemical shift and sequence homology.

Authors:  G Cornilescu; F Delaglio; A Bax
Journal:  J Biomol NMR       Date:  1999-03       Impact factor: 2.835

9.  1H, 13C and 15N chemical shift referencing in biomolecular NMR.

Authors:  D S Wishart; C G Bigam; J Yao; F Abildgaard; H J Dyson; E Oldfield; J L Markley; B D Sykes
Journal:  J Biomol NMR       Date:  1995-09       Impact factor: 2.835

10.  DSHIFT: a web server for predicting DNA chemical shifts.

Authors:  Sik Lok Lam
Journal:  Nucleic Acids Res       Date:  2007-05-21       Impact factor: 16.971
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  29 in total

1.  Physicochemical characterization of complex drug substances: evaluation of structural similarities and differences of protamine sulfate from various sources.

Authors:  David Awotwe-Otoo; Cyrus Agarabi; David Keire; Sau Lee; Andre Raw; Lawrence Yu; Muhammad J Habib; Mansoor A Khan; Rakhi B Shah
Journal:  AAPS J       Date:  2012-06-08       Impact factor: 4.009

2.  Nucleic acid helix structure determination from NMR proton chemical shifts.

Authors:  Ramon M van der Werf; Marco Tessari; Sybren S Wijmenga
Journal:  J Biomol NMR       Date:  2013-04-06       Impact factor: 2.835

3.  CSI 2.0: a significantly improved version of the Chemical Shift Index.

Authors:  Noor E Hafsa; David S Wishart
Journal:  J Biomol NMR       Date:  2014-10-02       Impact factor: 2.835

4.  Intramolecular 1H-13C distance measurement in uniformly 13C, 15N labeled peptides by solid-state NMR.

Authors:  Shenhui Li; Yongchao Su; Mei Hong
Journal:  Solid State Nucl Magn Reson       Date:  2012-06-15       Impact factor: 2.293

5.  Application of data mining tools for classification of protein structural class from residue based averaged NMR chemical shifts.

Authors:  Arun V Kumar; Rehana F M Ali; Yu Cao; V V Krishnan
Journal:  Biochim Biophys Acta       Date:  2015-03-07

6.  Rapid and reliable protein structure determination via chemical shift threading.

Authors:  Noor E Hafsa; Mark V Berjanskii; David Arndt; David S Wishart
Journal:  J Biomol NMR       Date:  2017-12-01       Impact factor: 2.835

7.  Conformational Switch to a β-Turn in a Staphylococcal Quorum Sensing Signal Peptide Causes a Dramatic Increase in Potency.

Authors:  Joseph K Vasquez; Korbin H J West; Tian Yang; Thomas J Polaske; Gabriel Cornilescu; Marco Tonelli; Helen E Blackwell
Journal:  J Am Chem Soc       Date:  2020-01-02       Impact factor: 15.419

Review 8.  Chemical shift-based methods in NMR structure determination.

Authors:  Santrupti Nerli; Andrew C McShan; Nikolaos G Sgourakis
Journal:  Prog Nucl Magn Reson Spectrosc       Date:  2018-03-11       Impact factor: 9.795

9.  3D (13)C-(13)C-(13)C correlation NMR for de novo distance determination of solid proteins and application to a human alpha-defensin.

Authors:  Shenhui Li; Yuan Zhang; Mei Hong
Journal:  J Magn Reson       Date:  2009-11-18       Impact factor: 2.229

10.  Predicting the redox state and secondary structure of cysteine residues using multi-dimensional classification analysis of NMR chemical shifts.

Authors:  Ching-Cheng Wang; Wen-Chung Lai; Woei-Jer Chuang
Journal:  J Biomol NMR       Date:  2016-09-09       Impact factor: 2.835
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