Literature DB >> 11755519

The direct determination of protein structure by NMR without assignment.

R Andrew Atkinson1, Vladimír Saudek.   

Abstract

Assignment of the resonances in nuclear magnetic resonance spectra is considered a pre-requisite for the interpretation of spectra that yield structural information. The determination of the three-dimensional structure of a biological macromolecule may, however, be achieved directly without spectral assignment, using the same set of heteronuclear scalar and dipolar coupling experiments as normally used. A cross-peak in any of the spectra may be interpreted as a distance between atoms, yielding a set of distances between unassigned atoms that serves to define the tertiary structure of the molecule. The principle is illustrated using the 76 amino acid protein ubiquitin.

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Year:  2002        PMID: 11755519     DOI: 10.1016/s0014-5793(01)03208-2

Source DB:  PubMed          Journal:  FEBS Lett        ISSN: 0014-5793            Impact factor:   4.124


  7 in total

1.  Estimation of protein secondary structure content directly from NMR spectra using an improved empirical correlation with averaged chemical shift.

Authors:  S P Mielke; V V Krishnan
Journal:  J Struct Funct Genomics       Date:  2005-11-09

Review 2.  Automated structure determination from NMR spectra.

Authors:  Peter Güntert
Journal:  Eur Biophys J       Date:  2008-09-20       Impact factor: 1.733

3.  Exclusively NOESY-based automated NMR assignment and structure determination of proteins.

Authors:  Teppei Ikeya; Jun-Goo Jee; Yoshiki Shigemitsu; Junpei Hamatsu; Masaki Mishima; Yutaka Ito; Masatsune Kainosho; Peter Güntert
Journal:  J Biomol NMR       Date:  2011-03-30       Impact factor: 2.835

4.  Characterization of protein secondary structure from NMR chemical shifts.

Authors:  Steven P Mielke; V V Krishnan
Journal:  Prog Nucl Magn Reson Spectrosc       Date:  2009-04-05       Impact factor: 9.795

Review 5.  Structure-oriented methods for protein NMR data analysis.

Authors:  Guillermo A Bermejo; Miguel Llinás
Journal:  Prog Nucl Magn Reson Spectrosc       Date:  2010-03-03       Impact factor: 9.795

6.  Sorting signals from protein NMR spectra: SPI, a Bayesian protocol for uncovering spin systems.

Authors:  Alexander Grishaev; Miguel Llinás
Journal:  J Biomol NMR       Date:  2002-11       Impact factor: 2.835

7.  CS23D: a web server for rapid protein structure generation using NMR chemical shifts and sequence data.

Authors:  David S Wishart; David Arndt; Mark Berjanskii; Peter Tang; Jianjun Zhou; Guohui Lin
Journal:  Nucleic Acids Res       Date:  2008-05-30       Impact factor: 16.971

  7 in total

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