Literature DB >> 20148317

ATP dependent chromatin remodeling enzymes in embryonic stem cells.

Srinivas Vinod Saladi1, Ivana L de la Serna.   

Abstract

Embryonic stem (ES) cells are pluripotent cells that can self renew or be induced to differentiate into multiple cell lineages, and thus have the potential to be utilized in regenerative medicine. Key pluripotency specific factors (Oct 4/Sox2/Nanog/Klf4) maintain the pluripotent state by activating expression of pluripotency specific genes and by inhibiting the expression of developmental regulators. Pluripotent ES cells are distinguished from differentiated cells by a specialized chromatin state that is required to epigenetically regulate the ES cell phenotype. Recent studies show that in addition to pluripotency specific factors, chromatin remodeling enzymes play an important role in regulating ES cell chromatin and the capacity to self-renew and to differentiate. Here we review recent studies that delineate the role of ATP dependent chromatin remodeling enzymes in regulating ES cell chromatin structure.

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Year:  2010        PMID: 20148317      PMCID: PMC2862992          DOI: 10.1007/s12015-010-9120-y

Source DB:  PubMed          Journal:  Stem Cell Rev Rep        ISSN: 2629-3277            Impact factor:   5.739


  115 in total

1.  The chromatin remodeler Mi-2beta is required for CD4 expression and T cell development.

Authors:  Christine J Williams; Taku Naito; Pablo Gómez-Del Arco; John R Seavitt; Susan M Cashman; Beverly De Souza; Xiaoqing Qi; Piper Keables; Ulrich H Von Andrian; Katia Georgopoulos
Journal:  Immunity       Date:  2004-06       Impact factor: 31.745

2.  Mutations in a new member of the chromodomain gene family cause CHARGE syndrome.

Authors:  Lisenka E L M Vissers; Conny M A van Ravenswaaij; Ronald Admiraal; Jane A Hurst; Bert B A de Vries; Irene M Janssen; Walter A van der Vliet; Erik H L P G Huys; Pieter J de Jong; Ben C J Hamel; Eric F P M Schoenmakers; Han G Brunner; Joris A Veltman; Ad Geurts van Kessel
Journal:  Nat Genet       Date:  2004-08-08       Impact factor: 38.330

Review 3.  ATP-dependent nucleosome remodeling complexes: enzymes tailored to deal with chromatin.

Authors:  Saïd Sif
Journal:  J Cell Biochem       Date:  2004-04-15       Impact factor: 4.429

Review 4.  The SANT domain: a unique histone-tail-binding module?

Authors:  Laurie A Boyer; Robert R Latek; Craig L Peterson
Journal:  Nat Rev Mol Cell Biol       Date:  2004-02       Impact factor: 94.444

Review 5.  Nucleosome positioning: occurrence, mechanisms, and functional consequences.

Authors:  R T Simpson
Journal:  Prog Nucleic Acid Res Mol Biol       Date:  1991

6.  Nucleosome positioning can affect the function of a cis-acting DNA element in vivo.

Authors:  R T Simpson
Journal:  Nature       Date:  1990-01-25       Impact factor: 49.962

7.  Histone H3.3 is enriched in covalent modifications associated with active chromatin.

Authors:  Erin McKittrick; Philip R Gafken; Kami Ahmad; Steven Henikoff
Journal:  Proc Natl Acad Sci U S A       Date:  2004-01-19       Impact factor: 11.205

8.  Silencing of human polycomb target genes is associated with methylation of histone H3 Lys 27.

Authors:  Antonis Kirmizis; Stephanie M Bartley; Andrei Kuzmichev; Raphael Margueron; Danny Reinberg; Roland Green; Peggy J Farnham
Journal:  Genes Dev       Date:  2004-07-01       Impact factor: 11.361

9.  p38 pathway targets SWI-SNF chromatin-remodeling complex to muscle-specific loci.

Authors:  Cristiano Simone; Sonia Vanina Forcales; David A Hill; Anthony N Imbalzano; Lucia Latella; Pier Lorenzo Puri
Journal:  Nat Genet       Date:  2004-06-20       Impact factor: 38.330

10.  A protein complex containing the conserved Swi2/Snf2-related ATPase Swr1p deposits histone variant H2A.Z into euchromatin.

Authors:  Michael S Kobor; Shivkumar Venkatasubrahmanyam; Marc D Meneghini; Jennifer W Gin; Jennifer L Jennings; Andrew J Link; Hiten D Madhani; Jasper Rine
Journal:  PLoS Biol       Date:  2004-03-23       Impact factor: 8.029

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  26 in total

1.  BAF60A mediates interactions between the microphthalmia-associated transcription factor and the BRG1-containing SWI/SNF complex during melanocyte differentiation.

Authors:  Shweta Aras; Srinivas Vinod Saladi; Tupa Basuroy; Himangi G Marathe; Patrick Lorès; Ivana L de la Serna
Journal:  J Cell Physiol       Date:  2018-12-04       Impact factor: 6.384

Review 2.  Epigenetic mechanisms in cardiac development and disease.

Authors:  Marcus Vallaster; Caroline Dacwag Vallaster; Sean M Wu
Journal:  Acta Biochim Biophys Sin (Shanghai)       Date:  2012-01       Impact factor: 3.848

Review 3.  Epigenetic landscape of pluripotent stem cells.

Authors:  Ji Woong Han; Young-sup Yoon
Journal:  Antioxid Redox Signal       Date:  2012-01-11       Impact factor: 8.401

Review 4.  Chromatin structure of pluripotent stem cells and induced pluripotent stem cells.

Authors:  Paul Delgado-Olguín; Félix Recillas-Targa
Journal:  Brief Funct Genomics       Date:  2011-01       Impact factor: 4.241

Review 5.  SWI/SNF chromatin remodeling complex: a new cofactor in reprogramming.

Authors:  Ling He; Huan Liu; Liling Tang
Journal:  Stem Cell Rev Rep       Date:  2012-03       Impact factor: 5.739

Review 6.  Establishing pluripotency in early development.

Authors:  Sarita S Paranjpe; Gert Jan C Veenstra
Journal:  Biochim Biophys Acta       Date:  2015-04-07

7.  SETD7 in cardiomyocyte differentiation and cardiac function.

Authors:  Tupa Basuroy; Ivana L de la Serna
Journal:  Stem Cell Investig       Date:  2019-09-09

8.  Histone deacetylase 9 is a negative regulator of adipogenic differentiation.

Authors:  Tapan K Chatterjee; Gila Idelman; Victor Blanco; Andra L Blomkalns; Mark G Piegore; Daniel S Weintraub; Santosh Kumar; Srinivas Rajsheker; David Manka; Steven M Rudich; Yaoliang Tang; David Y Hui; Rhonda Bassel-Duby; Eric N Olson; Jerry B Lingrel; Shuk-Mei Ho; Neal L Weintraub
Journal:  J Biol Chem       Date:  2011-06-16       Impact factor: 5.157

9.  The chromatin remodeler Chd4 maintains embryonic stem cell identity by controlling pluripotency- and differentiation-associated genes.

Authors:  Haixin Zhao; Zhijun Han; Xinyuan Liu; Junjie Gu; Fan Tang; Gang Wei; Ying Jin
Journal:  J Biol Chem       Date:  2017-03-15       Impact factor: 5.157

Review 10.  SWI/SNF-directed stem cell lineage specification: dynamic composition regulates specific stages of skeletal myogenesis.

Authors:  Paula Coutinho Toto; Pier Lorenzo Puri; Sonia Albini
Journal:  Cell Mol Life Sci       Date:  2016-05-20       Impact factor: 9.261

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