Literature DB >> 25857441

Establishing pluripotency in early development.

Sarita S Paranjpe1, Gert Jan C Veenstra2.   

Abstract

The earliest steps of embryonic development involve important changes in chromatin and transcription factor networks, which are orchestrated to establish pluripotent cells that will form the embryo. DNA methylation, histone modifications, the pluripotency regulatory network of transcription factors, maternal factors and newly translated proteins all contribute to these transitions in dynamic ways. Moreover, these dynamics are linked to the onset of zygotic transcription. We will review recent progress in our understanding of chromatin state and regulation of gene expression in the context of embryonic development in vertebrates, in particular mouse, Xenopus and zebrafish. We include work on mouse embryonic stem cells and highlight work that illustrates how early embryonic dynamics establish gene regulatory networks and the state of pluripotency.
Copyright © 2015. Published by Elsevier B.V.

Entities:  

Keywords:  Chromatin; Embryo; Methylation; Pluripotency; Zygotic genome activation

Mesh:

Substances:

Year:  2015        PMID: 25857441      PMCID: PMC4437833          DOI: 10.1016/j.bbagrm.2015.03.006

Source DB:  PubMed          Journal:  Biochim Biophys Acta        ISSN: 0006-3002


  159 in total

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Authors:  Rohinton T Kamakaka; Sue Biggins
Journal:  Genes Dev       Date:  2005-02-01       Impact factor: 11.361

2.  Core transcriptional regulatory circuitry in human embryonic stem cells.

Authors:  Laurie A Boyer; Tong Ihn Lee; Megan F Cole; Sarah E Johnstone; Stuart S Levine; Jacob P Zucker; Matthew G Guenther; Roshan M Kumar; Heather L Murray; Richard G Jenner; David K Gifford; Douglas A Melton; Rudolf Jaenisch; Richard A Young
Journal:  Cell       Date:  2005-09-23       Impact factor: 41.582

3.  Whole-genome bisulfite sequencing of two distinct interconvertible DNA methylomes of mouse embryonic stem cells.

Authors:  Ehsan Habibi; Arie B Brinkman; Julia Arand; Leonie I Kroeze; Hindrik H D Kerstens; Filomena Matarese; Konstantin Lepikhov; Marta Gut; Isabelle Brun-Heath; Nina C Hubner; Rosaria Benedetti; Lucia Altucci; Joop H Jansen; Jörn Walter; Ivo G Gut; Hendrik Marks; Hendrik G Stunnenberg
Journal:  Cell Stem Cell       Date:  2013-07-11       Impact factor: 24.633

4.  Distinct and predictive chromatin signatures of transcriptional promoters and enhancers in the human genome.

Authors:  Nathaniel D Heintzman; Rhona K Stuart; Gary Hon; Yutao Fu; Christina W Ching; R David Hawkins; Leah O Barrera; Sara Van Calcar; Chunxu Qu; Keith A Ching; Wei Wang; Zhiping Weng; Roland D Green; Gregory E Crawford; Bing Ren
Journal:  Nat Genet       Date:  2007-02-04       Impact factor: 38.330

5.  Chd1 is essential for the high transcriptional output and rapid growth of the mouse epiblast.

Authors:  Marcela Guzman-Ayala; Michael Sachs; Fong Ming Koh; Courtney Onodera; Aydan Bulut-Karslioglu; Chih-Jen Lin; Priscilla Wong; Rachel Nitta; Jun S Song; Miguel Ramalho-Santos
Journal:  Development       Date:  2014-12-05       Impact factor: 6.868

6.  Genome-wide view of TGFβ/Foxh1 regulation of the early mesendoderm program.

Authors:  William T Chiu; Rebekah Charney Le; Ira L Blitz; Margaret B Fish; Yi Li; Jacob Biesinger; Xiaohui Xie; Ken W Y Cho
Journal:  Development       Date:  2014-10-30       Impact factor: 6.868

7.  A major developmental transition in early Xenopus embryos: I. characterization and timing of cellular changes at the midblastula stage.

Authors:  J Newport; M Kirschner
Journal:  Cell       Date:  1982-10       Impact factor: 41.582

8.  Enhancer-associated H3K4 monomethylation by Trithorax-related, the Drosophila homolog of mammalian Mll3/Mll4.

Authors:  Hans-Martin Herz; Man Mohan; Alexander S Garruss; Kaiwei Liang; Yoh-Hei Takahashi; Kristen Mickey; Olaf Voets; C Peter Verrijzer; Ali Shilatifard
Journal:  Genes Dev       Date:  2012-11-19       Impact factor: 11.361

9.  Nanog, Pou5f1 and SoxB1 activate zygotic gene expression during the maternal-to-zygotic transition.

Authors:  Miler T Lee; Ashley R Bonneau; Carter M Takacs; Ariel A Bazzini; Kate R DiVito; Elizabeth S Fleming; Antonio J Giraldez
Journal:  Nature       Date:  2013-09-22       Impact factor: 49.962

10.  Otx2 and Oct4 drive early enhancer activation during embryonic stem cell transition from naive pluripotency.

Authors:  Shen-Hsi Yang; Tüzer Kalkan; Claire Morissroe; Hendrik Marks; Hendrik Stunnenberg; Austin Smith; Andrew D Sharrocks
Journal:  Cell Rep       Date:  2014-06-12       Impact factor: 9.423

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  18 in total

1.  The primary role of zebrafish nanog is in extra-embryonic tissue.

Authors:  James A Gagnon; Kamal Obbad; Alexander F Schier
Journal:  Development       Date:  2018-01-09       Impact factor: 6.868

2.  Heat Oscillations Driven by the Embryonic Cell Cycle Reveal the Energetic Costs of Signaling.

Authors:  Jonathan Rodenfels; Karla M Neugebauer; Jonathon Howard
Journal:  Dev Cell       Date:  2019-01-31       Impact factor: 12.270

3.  Distinct features of H3K4me3 and H3K27me3 chromatin domains in pre-implantation embryos.

Authors:  Xiaoyu Liu; Chenfei Wang; Wenqiang Liu; Jingyi Li; Chong Li; Xiaochen Kou; Jiayu Chen; Yanhong Zhao; Haibo Gao; Hong Wang; Yong Zhang; Yawei Gao; Shaorong Gao
Journal:  Nature       Date:  2016-09-14       Impact factor: 49.962

4.  Differential expression of parental alleles of BRCA1 in human preimplantation embryos.

Authors:  Pinar Tulay; Alpesh Doshi; Paul Serhal; Sioban B SenGupta
Journal:  Eur J Hum Genet       Date:  2016-09-28       Impact factor: 4.246

5.  A Structural Investigation into Oct4 Regulation by Orphan Nuclear Receptors, Germ Cell Nuclear Factor (GCNF), and Liver Receptor Homolog-1 (LRH-1).

Authors:  Emily R Weikum; Micheal L Tuntland; Michael N Murphy; Eric A Ortlund
Journal:  J Mol Biol       Date:  2016-10-27       Impact factor: 5.469

6.  Clock1a affects mesoderm development and primitive hematopoiesis by regulating Nodal-Smad3 signaling in the zebrafish embryo.

Authors:  Sha-Sha Bian; Xu-Lei Zheng; Hua-Qin Sun; Jian-Hui Chen; Yi-Lu Lu; Yun-Qiang Liu; Da-Chang Tao; Yong-Xin Ma
Journal:  J Biol Chem       Date:  2017-07-07       Impact factor: 5.157

7.  Chicken embryonic stem cells and primordial germ cells display different heterochromatic histone marks than their mammalian counterparts.

Authors:  Clémence Kress; Guillaume Montillet; Christian Jean; Aurélie Fuet; Bertrand Pain
Journal:  Epigenetics Chromatin       Date:  2016-02-10       Impact factor: 4.954

8.  Epigenetic DNA Methylation Mediating Octopus vulgaris Early Development: Effect of Essential Fatty Acids Enriched Diet.

Authors:  Pablo García-Fernández; Danie García-Souto; Eduardo Almansa; Paloma Morán; Camino Gestal
Journal:  Front Physiol       Date:  2017-05-16       Impact factor: 4.566

9.  Cellular and Molecular Features of Developmentally Programmed Genome Rearrangement in a Vertebrate (Sea Lamprey: Petromyzon marinus).

Authors:  Vladimir A Timoshevskiy; Joseph R Herdy; Melissa C Keinath; Jeramiah J Smith
Journal:  PLoS Genet       Date:  2016-06-24       Impact factor: 5.917

10.  Embryonic transcription is controlled by maternally defined chromatin state.

Authors:  Saartje Hontelez; Ila van Kruijsbergen; Georgios Georgiou; Simon J van Heeringen; Ozren Bogdanovic; Ryan Lister; Gert Jan C Veenstra
Journal:  Nat Commun       Date:  2015-12-18       Impact factor: 14.919

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