Literature DB >> 21325400

Chromatin structure of pluripotent stem cells and induced pluripotent stem cells.

Paul Delgado-Olguín1, Félix Recillas-Targa.   

Abstract

Pluripotent embryonic stem (ES) cells are specialized cells with a dynamic chromatin structure, which is intimately connected with their pluripotency and physiology. In recent years somatic cells have been reprogrammed to a pluripotent state through over-expression of a defined set of transcription factors. These cells, known as induced pluripotent stem (iPS) cells, recapitulate ES cell properties and can be differentiated to apparently all cell lineages, making iPS cells a suitable replacement for ES cells in future regenerative medicine. Chromatin modifiers play a key function in establishing and maintaining pluripotency, therefore, elucidating the mechanisms controlling chromatin structure in both ES and iPS cells is of utmost importance to understanding their properties and harnessing their therapeutic potential. In this review, we discuss recent studies that provide a genome-wide view of the chromatin structure signature in ES cells and iPS cells and that highlight the central role of histone modifiers and chromatin remodelers in pluripotency maintenance and induction.

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Year:  2011        PMID: 21325400      PMCID: PMC3080763          DOI: 10.1093/bfgp/elq038

Source DB:  PubMed          Journal:  Brief Funct Genomics        ISSN: 2041-2649            Impact factor:   4.241


  115 in total

1.  BAF250B-associated SWI/SNF chromatin-remodeling complex is required to maintain undifferentiated mouse embryonic stem cells.

Authors:  Zhijiang Yan; Zhong Wang; Lioudmila Sharova; Alexei A Sharov; Chen Ling; Yulan Piao; Kazuhiro Aiba; Ryo Matoba; Weidong Wang; Minoru S H Ko
Journal:  Stem Cells       Date:  2008-03-06       Impact factor: 6.277

2.  G9a and Jhdm2a regulate embryonic stem cell fusion-induced reprogramming of adult neural stem cells.

Authors:  Dengke K Ma; Cheng-Hsuan J Chiang; Karthikeyan Ponnusamy; Guo-Li Ming; Hongjun Song
Journal:  Stem Cells       Date:  2008-06-05       Impact factor: 6.277

3.  A combined chemical and genetic approach for the generation of induced pluripotent stem cells.

Authors:  Yan Shi; Jeong Tae Do; Caroline Desponts; Heung Sik Hahm; Hans R Schöler; Sheng Ding
Journal:  Cell Stem Cell       Date:  2008-06-05       Impact factor: 24.633

4.  Dissecting direct reprogramming through integrative genomic analysis.

Authors:  Tarjei S Mikkelsen; Jacob Hanna; Xiaolan Zhang; Manching Ku; Marius Wernig; Patrick Schorderet; Bradley E Bernstein; Rudolf Jaenisch; Eric S Lander; Alexander Meissner
Journal:  Nature       Date:  2008-05-28       Impact factor: 49.962

5.  Large intergenic non-coding RNA-RoR modulates reprogramming of human induced pluripotent stem cells.

Authors:  Sabine Loewer; Moran N Cabili; Mitchell Guttman; Yuin-Han Loh; Kelly Thomas; In Hyun Park; Manuel Garber; Matthew Curran; Tamer Onder; Suneet Agarwal; Philip D Manos; Sumon Datta; Eric S Lander; Thorsten M Schlaeger; George Q Daley; John L Rinn
Journal:  Nat Genet       Date:  2010-11-07       Impact factor: 38.330

6.  Nanog and Oct4 associate with unique transcriptional repression complexes in embryonic stem cells.

Authors:  Jiancong Liang; Ma Wan; Yi Zhang; Peili Gu; Huawei Xin; Sung Yun Jung; Jun Qin; Jiemin Wong; Austin J Cooney; Dan Liu; Zhou Songyang
Journal:  Nat Cell Biol       Date:  2008-05-04       Impact factor: 28.824

7.  Genome-scale DNA methylation maps of pluripotent and differentiated cells.

Authors:  Alexander Meissner; Tarjei S Mikkelsen; Hongcang Gu; Marius Wernig; Jacob Hanna; Andrey Sivachenko; Xiaolan Zhang; Bradley E Bernstein; Chad Nusbaum; David B Jaffe; Andreas Gnirke; Rudolf Jaenisch; Eric S Lander
Journal:  Nature       Date:  2008-07-06       Impact factor: 49.962

8.  Polycomb repressive complex 2 is dispensable for maintenance of embryonic stem cell pluripotency.

Authors:  Stormy J Chamberlain; Della Yee; Terry Magnuson
Journal:  Stem Cells       Date:  2008-04-10       Impact factor: 6.277

9.  An RNAi screen of chromatin proteins identifies Tip60-p400 as a regulator of embryonic stem cell identity.

Authors:  Thomas G Fazzio; Jason T Huff; Barbara Panning
Journal:  Cell       Date:  2008-07-11       Impact factor: 41.582

10.  Global mapping of DNA methylation in mouse promoters reveals epigenetic reprogramming of pluripotency genes.

Authors:  Cassandra R Farthing; Gabriella Ficz; Ray Kit Ng; Chun-Fung Chan; Simon Andrews; Wendy Dean; Myriam Hemberger; Wolf Reik
Journal:  PLoS Genet       Date:  2008-06-27       Impact factor: 5.917

View more
  10 in total

1.  Williams Syndrome Transcription Factor is critical for neural crest cell function in Xenopus laevis.

Authors:  Chris Barnett; Oya Yazgan; Hui-Ching Kuo; Sreepurna Malakar; Trevor Thomas; Amanda Fitzgerald; William Harbour; Jonathan J Henry; Jocelyn E Krebs
Journal:  Mech Dev       Date:  2012-06-09       Impact factor: 1.882

Review 2.  Lymphoid-specific helicase in epigenetics, DNA repair and cancer.

Authors:  Xiangyu Chen; Yamei Li; Karla Rubio; Bi Deng; Yuyi Li; Qinwei Tang; Chao Mao; Shuang Liu; Desheng Xiao; Guillermo Barreto; Yongguang Tao
Journal:  Br J Cancer       Date:  2021-09-07       Impact factor: 9.075

3.  Interaction of Sox2 with RNA binding proteins in mouse embryonic stem cells.

Authors:  Paulo P Amaral; Pär G Engström; Samuel C Robson; Michael L Nielsen; Tony Kouzarides; Gonçalo Castelo-Branco
Journal:  Exp Cell Res       Date:  2019-05-09       Impact factor: 3.905

4.  Method for evaluation of human induced pluripotent stem cell quality using image analysis based on the biological morphology of cells.

Authors:  Takashi Wakui; Tsuyoshi Matsumoto; Kenta Matsubara; Tomoyuki Kawasaki; Hiroshi Yamaguchi; Hidenori Akutsu
Journal:  J Med Imaging (Bellingham)       Date:  2017-11-02

5.  A synthetic small molecule for rapid induction of multiple pluripotency genes in mouse embryonic fibroblasts.

Authors:  Ganesh N Pandian; Yusuke Nakano; Shinsuke Sato; Hironobu Morinaga; Toshikazu Bando; Hiroki Nagase; Hiroshi Sugiyama
Journal:  Sci Rep       Date:  2012-07-30       Impact factor: 4.379

6.  Polycomb group protein expression during differentiation of human embryonic stem cells into pancreatic lineage in vitro.

Authors:  Prasad Pethe; Punam Nagvenkar; Deepa Bhartiya
Journal:  BMC Cell Biol       Date:  2014-05-24       Impact factor: 4.241

7.  DNA methylation dynamics in the rat EGF gene promoter after partial hepatectomy.

Authors:  Deming Li; Jinyu Fan; Ziwei Li; Cunshuan Xu
Journal:  Genet Mol Biol       Date:  2014-06       Impact factor: 1.771

8.  Human amniotic epithelial cell feeder layers maintain iPS cell pluripotency by inhibiting endogenous DNA methyltransferase 1.

Authors:  Qing Chen; Chaolin Qiu; Yongyi Huang; Lizhen Jiang; Qin Huang; Lihe Guo; Te Liu
Journal:  Exp Ther Med       Date:  2013-09-02       Impact factor: 2.447

9.  Involvement of Polycomb Repressive Complex 2 in Maturation of Induced Pluripotent Stem Cells during Reprogramming of Mouse and Human Fibroblasts.

Authors:  Niusha Khazaie; Mohammad Massumi; Ping Wee; Mahdieh Salimi; Abdulshakour Mohammadnia; Moein Yaqubi
Journal:  PLoS One       Date:  2016-03-03       Impact factor: 3.240

10.  Sirt1 is regulated by miR-135a and involved in DNA damage repair during mouse cellular reprogramming.

Authors:  Andy Chun Hang Chen; Qian Peng; Sze Wan Fong; William Shu Biu Yeung; Yin Lau Lee
Journal:  Aging (Albany NY)       Date:  2020-04-26       Impact factor: 5.682

  10 in total

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