Literature DB >> 15476395

Rate-temperature relationships in lambda-repressor fragment lambda 6-85 folding.

Wei Yuan Yang1, Martin Gruebele.   

Abstract

Two classes of lambda(6-85) mutants (those richer in alanine, and those richer in glycine) have very similar slopes in an Arrhenius plot of the unfolding rates but very different temperature dependencies of the folding rates. Temperature-dependent interactions (e.g., hydrophobicity) play a large role in the initial stages of folding but not in the initial stages of unfolding of lambda(6-85). Placement of the transition state in terms of its surface exposure and entropy shows that at least two reaction coordinates are required to describe folding of all mutants over the full temperature range. The unusual Arrhenius plots of the very fastest mutant provide an additional kinetic signature for downhill folding.

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Year:  2004        PMID: 15476395     DOI: 10.1021/bi049113b

Source DB:  PubMed          Journal:  Biochemistry        ISSN: 0006-2960            Impact factor:   3.162


  34 in total

1.  The fast and the slow: folding and trapping of λ6-85.

Authors:  Maxim B Prigozhin; Martin Gruebele
Journal:  J Am Chem Soc       Date:  2011-11-14       Impact factor: 15.419

2.  A natural missing link between activated and downhill protein folding scenarios.

Authors:  Feng Liu; Caroline Maynard; Gregory Scott; Artem Melnykov; Kathleen B Hall; Martin Gruebele
Journal:  Phys Chem Chem Phys       Date:  2010-02-11       Impact factor: 3.676

3.  Kinetics are probe-dependent during downhill folding of an engineered lambda6-85 protein.

Authors:  Hairong Ma; Martin Gruebele
Journal:  Proc Natl Acad Sci U S A       Date:  2005-02-07       Impact factor: 11.205

4.  Solvent-tuning the collapse and helix formation time scales of lambda(6-85)*.

Authors:  Charles Dumont; Yoshitaka Matsumura; Seung Joong Kim; Jinsong Li; Elena Kondrashkina; Hiroshi Kihara; Martin Gruebele
Journal:  Protein Sci       Date:  2006-11       Impact factor: 6.725

5.  The Surface of Protein λ6-85 Can Act as a Template for Recurring Poly(ethylene glycol) Structure.

Authors:  Shu-Han Chao; Jan Schäfer; Martin Gruebele
Journal:  Biochemistry       Date:  2017-10-06       Impact factor: 3.162

6.  Heterogeneity even at the speed limit of folding: large-scale molecular dynamics study of a fast-folding variant of the villin headpiece.

Authors:  Daniel L Ensign; Peter M Kasson; Vijay S Pande
Journal:  J Mol Biol       Date:  2007-09-29       Impact factor: 5.469

7.  Simulating replica exchange simulations of protein folding with a kinetic network model.

Authors:  Weihua Zheng; Michael Andrec; Emilio Gallicchio; Ronald M Levy
Journal:  Proc Natl Acad Sci U S A       Date:  2007-09-18       Impact factor: 11.205

8.  Protein folding kinetics: barrier effects in chemical and thermal denaturation experiments.

Authors:  Athi N Naganathan; Urmi Doshi; Victor Muñoz
Journal:  J Am Chem Soc       Date:  2007-04-10       Impact factor: 15.419

9.  An experimental survey of the transition between two-state and downhill protein folding scenarios.

Authors:  Feng Liu; Deguo Du; Amelia A Fuller; Jennifer E Davoren; Peter Wipf; Jeffery W Kelly; Martin Gruebele
Journal:  Proc Natl Acad Sci U S A       Date:  2008-02-11       Impact factor: 11.205

10.  Simple continuous and discrete models for simulating replica exchange simulations of protein folding.

Authors:  Weihua Zheng; Michael Andrec; Emilio Gallicchio; Ronald M Levy
Journal:  J Phys Chem B       Date:  2008-02-06       Impact factor: 2.991

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