Literature DB >> 20138580

Uridine insertion/deletion RNA editing in Trypanosomatids: specific stimulation in vitro of Leishmania tarentolae REL1 RNA ligase activity by the MP63 zinc finger protein.

Guanghan Gao1, Kestrel Rogers, Feng Li, Qiang Guo, Daren Osato, Sharleen X Zhou, Arnold M Falick, Larry Simpson.   

Abstract

U-insertion/deletion RNA editing of mitochondrial mRNAs in trypanosome mitochondria is mediated by a core complex (RECC) containing around 16-20 proteins which is linked to several other multiprotein complexes by RNA. There are two known subcomplexes in the RECC: the REL1 subcomplex which contains the REL1 RNA ligase, the MP63 zinc finger-containing protein and the REX2 U-specific 3'-5' exonuclease; and the REL2 subcomplex which contains the REL2 RNA ligase, the RET2 3' TUTase and the MP81 zinc finger-containing protein. In this study we have affinity isolated recombinant TAP-tagged Leishmania major RET2 and Leishmania tarentolae MP63, REL1 and REL2 proteins after expression in baculovirus-infected insect cells. Recombinant MP63 protein was found to stimulate several in vitro activities of recombinant REL1; these activities include autoadenylation, bridged ligation and even pre-cleaved gRNA-mediated U-insertion editing with RET2 which is in the REL2 subcomplex. There was no effect of recombinant MP63 on similar REL2 ligation activities. The specificity for REL1 is consistent with MP63 being a component of the REL1 subcomplex. These results suggest that in vivo the interaction of MP63 with REL1 may play a role in regulating the overall activity of RNA editing. 2010 Elsevier GmbH. All rights reserved.

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Year:  2010        PMID: 20138580      PMCID: PMC2864329          DOI: 10.1016/j.protis.2010.01.001

Source DB:  PubMed          Journal:  Protist        ISSN: 1434-4610


  38 in total

Review 1.  The tandem affinity purification (TAP) method: a general procedure of protein complex purification.

Authors:  O Puig; F Caspary; G Rigaut; B Rutz; E Bouveret; E Bragado-Nilsson; M Wilm; B Séraphin
Journal:  Methods       Date:  2001-07       Impact factor: 3.608

2.  Disruption of the zinc finger motifs in the Leishmania tarentolae LC-4 (=TbMP63) L-complex editing protein affects the stability of the L-complex.

Authors:  Xuedong Kang; Arnold M Falick; Robert E Nelson; Guanghan Gao; Kestrel Rogers; Ruslan Aphasizhev; Larry Simpson
Journal:  J Biol Chem       Date:  2003-11-06       Impact factor: 5.157

3.  Distinct functions of two RNA ligases in active Trypanosoma brucei RNA editing complexes.

Authors:  Jorge Cruz-Reyes; Alevtina G Zhelonkina; Catherine E Huang; Barbara Sollner-Webb
Journal:  Mol Cell Biol       Date:  2002-07       Impact factor: 4.272

Review 4.  Mitochondrial proteins and complexes in Leishmania and Trypanosoma involved in U-insertion/deletion RNA editing.

Authors:  Larry Simpson; Ruslan Aphasizhev; Guanghan Gao; Xuedong Kang
Journal:  RNA       Date:  2004-02       Impact factor: 4.942

5.  TbMP57 is a 3' terminal uridylyl transferase (TUTase) of the Trypanosoma brucei editosome.

Authors:  Nancy Lewis Ernst; Brian Panicucci; Robert P Igo; Aswini K Panigrahi; Reza Salavati; Kenneth Stuart
Journal:  Mol Cell       Date:  2003-06       Impact factor: 17.970

6.  A model for RNA editing in kinetoplastid mitochondria: "guide" RNA molecules transcribed from maxicircle DNA provide the edited information.

Authors:  B Blum; N Bakalara; L Simpson
Journal:  Cell       Date:  1990-01-26       Impact factor: 41.582

7.  TbMP44 is essential for RNA editing and structural integrity of the editosome in Trypanosoma brucei.

Authors:  Bingbing Wang; Nancy Lewis Ernst; Setareh S Palazzo; Aswini K Panigrahi; Reza Salavati; Kenneth Stuart
Journal:  Eukaryot Cell       Date:  2003-06

Review 8.  Uridine insertion/deletion RNA editing in trypanosome mitochondria: a complex business.

Authors:  Larry Simpson; Sandro Sbicego; Ruslan Aphasizhev
Journal:  RNA       Date:  2003-03       Impact factor: 4.942

9.  Is the Trypanosoma brucei REL1 RNA ligase specific for U-deletion RNA editing, and is the REL2 RNA ligase specific for U-insertion editing?

Authors:  Guanghan Gao; Larry Simpson
Journal:  J Biol Chem       Date:  2003-05-14       Impact factor: 5.157

10.  Separate insertion and deletion subcomplexes of the Trypanosoma brucei RNA editing complex.

Authors:  Achim Schnaufer; Nancy Lewis Ernst; Setareh S Palazzo; Jeff O'Rear; Reza Salavati; Kenneth Stuart
Journal:  Mol Cell       Date:  2003-08       Impact factor: 17.970

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  7 in total

Review 1.  When you can't trust the DNA: RNA editing changes transcript sequences.

Authors:  Volker Knoop
Journal:  Cell Mol Life Sci       Date:  2010-10-12       Impact factor: 9.261

Review 2.  Uridine insertion/deletion editing in trypanosomes: a playground for RNA-guided information transfer.

Authors:  Ruslan Aphasizhev; Inna Aphasizheva
Journal:  Wiley Interdiscip Rev RNA       Date:  2011-03-23       Impact factor: 9.957

3.  Naphthalene-based RNA editing inhibitor blocks RNA editing activities and editosome assembly in Trypanosoma brucei.

Authors:  Houtan Moshiri; Stéphane Acoca; Smriti Kala; Hamed Shateri Najafabadi; Hervé Hogues; Enrico Purisima; Reza Salavati
Journal:  J Biol Chem       Date:  2011-03-04       Impact factor: 5.157

4.  Explorations of linked editosome domains leading to the discovery of motifs defining conserved pockets in editosome OB-folds.

Authors:  Young-Jun Park; Wim G J Hol
Journal:  J Struct Biol       Date:  2012-08-10       Impact factor: 2.867

Review 5.  Trypanosome RNA editing: the complexity of getting U in and taking U out.

Authors:  Laurie K Read; Julius Lukeš; Hassan Hashimi
Journal:  Wiley Interdiscip Rev RNA       Date:  2015-11-02       Impact factor: 9.957

6.  The structure of the C-terminal domain of the largest editosome interaction protein and its role in promoting RNA binding by RNA-editing ligase L2.

Authors:  Young-Jun Park; Tanya Budiarto; Meiting Wu; Els Pardon; Jan Steyaert; Wim G J Hol
Journal:  Nucleic Acids Res       Date:  2012-05-04       Impact factor: 16.971

7.  A specific, promoter-independent activity of T7 RNA polymerase suggests a general model for DNA/RNA editing in single subunit RNA Polymerases.

Authors:  Subha Narayan Sarcar; Dennis L Miller
Journal:  Sci Rep       Date:  2018-09-17       Impact factor: 4.379

  7 in total

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