Literature DB >> 20133849

A circadian clock in Saccharomyces cerevisiae.

Zheng Eelderink-Chen1, Gabriella Mazzotta, Marcel Sturre, Jasper Bosman, Till Roenneberg, Martha Merrow.   

Abstract

Circadian timing is a fundamental biological process, underlying cellular physiology in animals, plants, fungi, and cyanobacteria. Circadian clocks organize gene expression, metabolism, and behavior such that they occur at specific times of day. The biological clocks that orchestrate these daily changes confer a survival advantage and dominate daily behavior, for example, waking us in the morning and helping us to sleep at night. The molecular mechanism of circadian clocks has been sketched out in genetic model systems from prokaryotes to humans, revealing a combination of transcriptional and posttranscriptional pathways, but the clock mechanism is far from solved. Although Saccharomyces cerevisiae is among the most powerful genetic experimental systems and, as such, could greatly contribute to our understanding of cellular timing, it still remains absent from the repertoire of circadian model organisms. Here, we use continuous cultures of yeast, establishing conditions that reveal characteristic clock properties similar to those described in other species. Our results show that metabolism in yeast shows systematic circadian entrainment, responding to cycle length and zeitgeber (stimulus) strength, and a (heavily damped) free running rhythm. Furthermore, the clock is obvious in a standard, haploid, auxotrophic strain, opening the door for rapid progress into cellular clock mechanisms.

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Year:  2010        PMID: 20133849      PMCID: PMC2836648          DOI: 10.1073/pnas.0907902107

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  43 in total

Review 1.  Mutagenic study of the structure, function and biogenesis of the yeast plasma membrane H(+)-ATPase.

Authors:  P Morsomme; C W Slayman; A Goffeau
Journal:  Biochim Biophys Acta       Date:  2000-11-10

2.  Multiple signaling pathways elicit circadian gene expression in cultured Rat-1 fibroblasts.

Authors:  A Balsalobre; L Marcacci; U Schibler
Journal:  Curr Biol       Date:  2000-10-19       Impact factor: 10.834

3.  Persistence of masking responses to light in mice lacking rods and cones.

Authors:  N Mrosovsky; R J Lucas; R G Foster
Journal:  J Biol Rhythms       Date:  2001-12       Impact factor: 3.182

4.  Life before the clock: modeling circadian evolution.

Authors:  Till Roenneberg; Martha Merrow
Journal:  J Biol Rhythms       Date:  2002-12       Impact factor: 3.182

5.  Demasking biological oscillators: properties and principles of entrainment exemplified by the Neurospora circadian clock.

Authors:  Till Roenneberg; Zdravko Dragovic; Martha Merrow
Journal:  Proc Natl Acad Sci U S A       Date:  2005-05-17       Impact factor: 11.205

6.  The Arabidopsis circadian clock incorporates a cADPR-based feedback loop.

Authors:  Antony N Dodd; Michael J Gardner; Carlos T Hotta; Katharine E Hubbard; Neil Dalchau; John Love; Jean-Maurice Assie; Fiona C Robertson; Mia Kyed Jakobsen; Jorge Gonçalves; Dale Sanders; Alex A R Webb
Journal:  Science       Date:  2007-11-15       Impact factor: 47.728

7.  Resonating circadian clocks enhance fitness in cyanobacteria.

Authors:  Y Ouyang; C R Andersson; T Kondo; S S Golden; C H Johnson
Journal:  Proc Natl Acad Sci U S A       Date:  1998-07-21       Impact factor: 11.205

8.  The MEP2 ammonium permease regulates pseudohyphal differentiation in Saccharomyces cerevisiae.

Authors:  M C Lorenz; J Heitman
Journal:  EMBO J       Date:  1998-08-10       Impact factor: 11.598

9.  Real-time luminescence monitoring of cell-cycle and respiratory oscillations in yeast.

Authors:  J Brian Robertson; Chris C Stowers; Erik Boczko; Carl Hirschie Johnson
Journal:  Proc Natl Acad Sci U S A       Date:  2008-11-12       Impact factor: 11.205

10.  Circadian clock feedback cycle through NAMPT-mediated NAD+ biosynthesis.

Authors:  Kathryn Moynihan Ramsey; Jun Yoshino; Cynthia S Brace; Dana Abrassart; Yumiko Kobayashi; Biliana Marcheva; Hee-Kyung Hong; Jason L Chong; Ethan D Buhr; Choogon Lee; Joseph S Takahashi; Shin-Ichiro Imai; Joseph Bass
Journal:  Science       Date:  2009-03-19       Impact factor: 47.728

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  22 in total

1.  Visible light alters yeast metabolic rhythms by inhibiting respiration.

Authors:  James Brian Robertson; Chris R Davis; Carl Hirschie Johnson
Journal:  Proc Natl Acad Sci U S A       Date:  2013-12-02       Impact factor: 11.205

2.  Low temperature nullifies the circadian clock in cyanobacteria through Hopf bifurcation.

Authors:  Yoriko Murayama; Hiroshi Kori; Chiaki Oshima; Takao Kondo; Hideo Iwasaki; Hiroshi Ito
Journal:  Proc Natl Acad Sci U S A       Date:  2017-05-17       Impact factor: 11.205

Review 3.  The molecular basis of metabolic cycles and their relationship to circadian rhythms.

Authors:  Jane Mellor
Journal:  Nat Struct Mol Biol       Date:  2016-12-06       Impact factor: 15.369

Review 4.  Making Time: Conservation of Biological Clocks from Fungi to Animals.

Authors:  Jay C Dunlap; Jennifer J Loros
Journal:  Microbiol Spectr       Date:  2017-05

5.  A circadian oscillator in the fungus Botrytis cinerea regulates virulence when infecting Arabidopsis thaliana.

Authors:  Montserrat A Hevia; Paulo Canessa; Hanna Müller-Esparza; Luis F Larrondo
Journal:  Proc Natl Acad Sci U S A       Date:  2015-06-29       Impact factor: 11.205

6.  Physiological and transcriptional responses of anaerobic chemostat cultures of Saccharomyces cerevisiae subjected to diurnal temperature cycles.

Authors:  Marit Hebly; Dick de Ridder; Erik A F de Hulster; Pilar de la Torre Cortes; Jack T Pronk; Pascale Daran-Lapujade
Journal:  Appl Environ Microbiol       Date:  2014-05-09       Impact factor: 4.792

7.  Long-term imaging of circadian locomotor rhythms of a freely crawling C. elegans population.

Authors:  Ari Winbush; Matthew Gruner; Grant W Hennig; Alexander M van der Linden
Journal:  J Neurosci Methods       Date:  2015-04-22       Impact factor: 2.390

8.  Synchronous activation of cell division by light or temperature stimuli in the dimorphic yeast Schizosaccharomyces japonicus.

Authors:  Sho Okamoto; Kanji Furuya; Shingo Nozaki; Keita Aoki; Hironori Niki
Journal:  Eukaryot Cell       Date:  2013-07-19

Review 9.  Regulation of circadian clocks by redox homeostasis.

Authors:  Alessandra Stangherlin; Akhilesh B Reddy
Journal:  J Biol Chem       Date:  2013-07-16       Impact factor: 5.157

Review 10.  Small molecule modifiers of circadian clocks.

Authors:  Zheng Chen; Seung-Hee Yoo; Joseph S Takahashi
Journal:  Cell Mol Life Sci       Date:  2012-11-16       Impact factor: 9.261

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