Literature DB >> 28515313

Low temperature nullifies the circadian clock in cyanobacteria through Hopf bifurcation.

Yoriko Murayama1,2, Hiroshi Kori3, Chiaki Oshima1, Takao Kondo4,5, Hideo Iwasaki2, Hiroshi Ito6.   

Abstract

Cold temperatures lead to nullification of circadian rhythms in many organisms. Two typical scenarios explain the disappearance of rhythmicity: the first is oscillation death, which is the transition from self-sustained oscillation to damped oscillation that occurs at a critical temperature. The second scenario is oscillation arrest, in which oscillation terminates at a certain phase. In the field of nonlinear dynamics, these mechanisms are called the Hopf bifurcation and the saddle-node on an invariant circle bifurcation, respectively. Although these mechanisms lead to distinct dynamical properties near the critical temperature, it is unclear to which scenario the circadian clock belongs. Here we reduced the temperature to dampen the reconstituted circadian rhythm of phosphorylation of the recombinant cyanobacterial clock protein KaiC. The data led us to conclude that Hopf bifurcation occurred at ∼19 °C. Below this critical temperature, the self-sustained rhythms of KaiC phosphorylation transformed to damped oscillations, which are predicted by the Hopf bifurcation theory. Moreover, we detected resonant oscillations below the critical temperature when temperature was periodically varied, which was reproduced by numerical simulations. Our findings suggest that the transition to a damped oscillation through Hopf bifurcation contributes to maintaining the circadian rhythm of cyanobacteria through resonance at cold temperatures.

Entities:  

Keywords:  Hopf bifurcation; circadian rhythms; cyanobacteria; in vitro; low temperature

Mesh:

Substances:

Year:  2017        PMID: 28515313      PMCID: PMC5465896          DOI: 10.1073/pnas.1620378114

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  31 in total

1.  Reconstitution of circadian oscillation of cyanobacterial KaiC phosphorylation in vitro.

Authors:  Masato Nakajima; Keiko Imai; Hiroshi Ito; Taeko Nishiwaki; Yoriko Murayama; Hideo Iwasaki; Tokitaka Oyama; Takao Kondo
Journal:  Science       Date:  2005-04-15       Impact factor: 47.728

2.  ON THE MECHANISM OF TEMPERATURE INDEPENDENCE IN A BIOLOGICAL CLOCK.

Authors:  J W Hastings; B M Sweeney
Journal:  Proc Natl Acad Sci U S A       Date:  1957-09-15       Impact factor: 11.205

3.  A KaiC-associating SasA-RpaA two-component regulatory system as a major circadian timing mediator in cyanobacteria.

Authors:  Naoki Takai; Masato Nakajima; Tokitaka Oyama; Ryotaku Kito; Chieko Sugita; Mamoru Sugita; Takao Kondo; Hideo Iwasaki
Journal:  Proc Natl Acad Sci U S A       Date:  2006-08-01       Impact factor: 11.205

4.  A sequential program of dual phosphorylation of KaiC as a basis for circadian rhythm in cyanobacteria.

Authors:  Taeko Nishiwaki; Yoshinori Satomi; Yohko Kitayama; Kazuki Terauchi; Reiko Kiyohara; Toshifumi Takao; Takao Kondo
Journal:  EMBO J       Date:  2007-08-23       Impact factor: 11.598

5.  Circadian control of global gene expression by the cyanobacterial master regulator RpaA.

Authors:  Joseph S Markson; Joseph R Piechura; Anna M Puszynska; Erin K O'Shea
Journal:  Cell       Date:  2013-12-05       Impact factor: 41.582

6.  Dual KaiC-based oscillations constitute the circadian system of cyanobacteria.

Authors:  Yohko Kitayama; Taeko Nishiwaki; Kazuki Terauchi; Takao Kondo
Journal:  Genes Dev       Date:  2008-05-13       Impact factor: 11.361

7.  Resonating circadian clocks enhance fitness in cyanobacteria.

Authors:  Y Ouyang; C R Andersson; T Kondo; S S Golden; C H Johnson
Journal:  Proc Natl Acad Sci U S A       Date:  1998-07-21       Impact factor: 11.205

8.  A novel circadian phenotype based on firefly luciferase expression in transgenic plants.

Authors:  A J Millar; S R Short; N H Chua; S A Kay
Journal:  Plant Cell       Date:  1992-09       Impact factor: 11.277

9.  Robust circadian oscillations in growing cyanobacteria require transcriptional feedback.

Authors:  Shu-Wen Teng; Shankar Mukherji; Jeffrey R Moffitt; Sophie de Buyl; Erin K O'Shea
Journal:  Science       Date:  2013-05-10       Impact factor: 47.728

10.  KaiC intersubunit communication facilitates robustness of circadian rhythms in cyanobacteria.

Authors:  Yohko Kitayama; Taeko Nishiwaki-Ohkawa; Yukiko Sugisawa; Takao Kondo
Journal:  Nat Commun       Date:  2013       Impact factor: 14.919

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  11 in total

1.  Non-sinusoidal Waveform in Temperature-Compensated Circadian Oscillations.

Authors:  Shingo Gibo; Gen Kurosawa
Journal:  Biophys J       Date:  2019-01-15       Impact factor: 4.033

2.  Potential contribution of tandem circadian enhancers to nonlinear oscillations in clock gene expression.

Authors:  Isao T Tokuda; Akihiko Okamoto; Ritsuko Matsumura; Toru Takumi; Makoto Akashi
Journal:  Mol Biol Cell       Date:  2017-06-21       Impact factor: 4.138

3.  Transcription through the eye of a needle: daily and annual cyclic gene expression variation in Douglas-fir needles.

Authors:  Richard Cronn; Peter C Dolan; Sanjuro Jogdeo; Jill L Wegrzyn; David B Neale; J Bradley St Clair; Dee R Denver
Journal:  BMC Genomics       Date:  2017-07-24       Impact factor: 3.969

4.  Bayesian modeling reveals metabolite-dependent ultrasensitivity in the cyanobacterial circadian clock.

Authors:  Lu Hong; Danylo O Lavrentovich; Archana Chavan; Eugene Leypunskiy; Eileen Li; Charles Matthews; Andy LiWang; Michael J Rust; Aaron R Dinner
Journal:  Mol Syst Biol       Date:  2020-06       Impact factor: 11.429

5.  Single-molecular and ensemble-level oscillations of cyanobacterial circadian clock.

Authors:  Sumita Das; Tomoki P Terada; Masaki Sasai
Journal:  Biophys Physicobiol       Date:  2018-05-26

6.  Development and Optimization of Expression, Purification, and ATPase Assay of KaiC for Medium-Throughput Screening of Circadian Clock Mutants in Cyanobacteria.

Authors:  Dongyan Ouyang; Yoshihiko Furuike; Atsushi Mukaiyama; Kumiko Ito-Miwa; Takao Kondo; Shuji Akiyama
Journal:  Int J Mol Sci       Date:  2019-06-07       Impact factor: 5.923

7.  Damped circadian oscillation in the absence of KaiA in Synechococcus.

Authors:  Naohiro Kawamoto; Hiroshi Ito; Isao T Tokuda; Hideo Iwasaki
Journal:  Nat Commun       Date:  2020-05-07       Impact factor: 14.919

8.  Circadian clock-controlled gene expression in co-cultured, mat-forming cyanobacteria.

Authors:  Christine Hörnlein; Veronique Confurius-Guns; Michele Grego; Lucas J Stal; Henk Bolhuis
Journal:  Sci Rep       Date:  2020-08-24       Impact factor: 4.379

9.  3,4-Dibromo-7-Azaindole Modulates Arabidopsis Circadian Clock by Inhibiting Casein Kinase 1 Activity.

Authors:  Azusa Ono; Ayato Sato; Kazuhiro J Fujimoto; Hiromi Matsuo; Takeshi Yanai; Toshinori Kinoshita; Norihito Nakamichi
Journal:  Plant Cell Physiol       Date:  2019-11-01       Impact factor: 4.927

10.  Carboxysome Mispositioning Alters Growth, Morphology, and Rubisco Level of the Cyanobacterium Synechococcus elongatus PCC 7942.

Authors:  Rees Rillema; Y Hoang; Joshua S MacCready; Anthony G Vecchiarelli
Journal:  mBio       Date:  2021-08-03       Impact factor: 7.867

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