Literature DB >> 20123079

Nhp6: a small but powerful effector of chromatin structure in Saccharomyces cerevisiae.

David J Stillman1.   

Abstract

The small Nhp6 protein from budding yeast is an abundant protein that binds DNA non-specifically and bends DNA sharply. It contains only a single HMGB domain that binds DNA in the minor groove and a basic N-terminal extension that wraps around DNA to contact the major groove. This review describes the genetic and biochemical experiments that indicate Nhp6 functions in promoting RNA pol III transcription, in formation of preinitiation complexes at promoters transcribed by RNA pol II, and in facilitating the activity of chromatin modifying complexes. The FACT complex may provide a paradigm for how Nhp6 functions with chromatin factors, as Nhp6 allows Spt16-Pob3 to bind to and reorganize nucleosomes in vitro. Copyright 2009 Elsevier B.V. All rights reserved.

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Year:  2010        PMID: 20123079      PMCID: PMC2818483          DOI: 10.1016/j.bbagrm.2009.11.010

Source DB:  PubMed          Journal:  Biochim Biophys Acta        ISSN: 0006-3002


  65 in total

1.  Solution structure of the HMG protein NHP6A and its interaction with DNA reveals the structural determinants for non-sequence-specific binding.

Authors:  F H Allain; Y M Yen; J E Masse; P Schultze; T Dieckmann; R C Johnson; J Feigon
Journal:  EMBO J       Date:  1999-05-04       Impact factor: 11.598

2.  Functional organization of the yeast proteome by systematic analysis of protein complexes.

Authors:  Anne-Claude Gavin; Markus Bösche; Roland Krause; Paola Grandi; Martina Marzioch; Andreas Bauer; Jörg Schultz; Jens M Rick; Anne-Marie Michon; Cristina-Maria Cruciat; Marita Remor; Christian Höfert; Malgorzata Schelder; Miro Brajenovic; Heinz Ruffner; Alejandro Merino; Karin Klein; Manuela Hudak; David Dickson; Tatjana Rudi; Volker Gnau; Angela Bauch; Sonja Bastuck; Bettina Huhse; Christina Leutwein; Marie-Anne Heurtier; Richard R Copley; Angela Edelmann; Erich Querfurth; Vladimir Rybin; Gerard Drewes; Manfred Raida; Tewis Bouwmeester; Peer Bork; Bertrand Seraphin; Bernhard Kuster; Gitte Neubauer; Giulio Superti-Furga
Journal:  Nature       Date:  2002-01-10       Impact factor: 49.962

3.  Characterization of a high mobility group 1/2 homolog in yeast.

Authors:  J Lu; R Kobayashi; S J Brill
Journal:  J Biol Chem       Date:  1996-12-27       Impact factor: 5.157

4.  Marginal fitness contributions of nonessential genes in yeast.

Authors:  J W Thatcher; J M Shaw; W J Dickinson
Journal:  Proc Natl Acad Sci U S A       Date:  1998-01-06       Impact factor: 11.205

5.  Enhancement of DNA flexibility in vitro and in vivo by HMGB box A proteins carrying box B residues.

Authors:  Nadia T Sebastian; Emily M Bystry; Nicole A Becker; L James Maher
Journal:  Biochemistry       Date:  2009-03-17       Impact factor: 3.162

6.  The High Mobility Group Box Transcription Factor Nhp6Ap enters the nucleus by a calmodulin-dependent, Ran-independent pathway.

Authors:  John A Hanover; Dona C Love; Nikki DeAngelis; Meghan E O'Kane; Raquel Lima-Miranda; Timothy Schulz; Yi-Meng Yen; Reid C Johnson; William A Prinz
Journal:  J Biol Chem       Date:  2007-09-18       Impact factor: 5.157

7.  Role for Nhp6, Gcn5, and the Swi/Snf complex in stimulating formation of the TATA-binding protein-TFIIA-DNA complex.

Authors:  Debabrata Biswas; Anthony N Imbalzano; Peter Eriksson; Yaxin Yu; David J Stillman
Journal:  Mol Cell Biol       Date:  2004-09       Impact factor: 4.272

8.  Global landscape of protein complexes in the yeast Saccharomyces cerevisiae.

Authors:  Nevan J Krogan; Gerard Cagney; Haiyuan Yu; Gouqing Zhong; Xinghua Guo; Alexandr Ignatchenko; Joyce Li; Shuye Pu; Nira Datta; Aaron P Tikuisis; Thanuja Punna; José M Peregrín-Alvarez; Michael Shales; Xin Zhang; Michael Davey; Mark D Robinson; Alberto Paccanaro; James E Bray; Anthony Sheung; Bryan Beattie; Dawn P Richards; Veronica Canadien; Atanas Lalev; Frank Mena; Peter Wong; Andrei Starostine; Myra M Canete; James Vlasblom; Samuel Wu; Chris Orsi; Sean R Collins; Shamanta Chandran; Robin Haw; Jennifer J Rilstone; Kiran Gandi; Natalie J Thompson; Gabe Musso; Peter St Onge; Shaun Ghanny; Mandy H Y Lam; Gareth Butland; Amin M Altaf-Ul; Shigehiko Kanaya; Ali Shilatifard; Erin O'Shea; Jonathan S Weissman; C James Ingles; Timothy R Hughes; John Parkinson; Mark Gerstein; Shoshana J Wodak; Andrew Emili; Jack F Greenblatt
Journal:  Nature       Date:  2006-03-22       Impact factor: 49.962

9.  Evidence that Spt6p controls chromatin structure by a direct interaction with histones.

Authors:  A Bortvin; F Winston
Journal:  Science       Date:  1996-06-07       Impact factor: 47.728

10.  Concentrations of high-mobility-group proteins in the nucleus and cytoplasm of several rat tissues.

Authors:  L Kuehl; B Salmond; L Tran
Journal:  J Cell Biol       Date:  1984-08       Impact factor: 10.539

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  45 in total

1.  Role of Nhp6 and Hmo1 in SWI/SNF occupancy and nucleosome landscape at gene regulatory regions.

Authors:  Matias I Hepp; Michaela Smolle; Cristian Gidi; Roberto Amigo; Nicole Valenzuela; Axel Arriagada; Alejandro Maureira; Madelaine M Gogol; Marcela Torrejón; Jerry L Workman; José L Gutiérrez
Journal:  Biochim Biophys Acta Gene Regul Mech       Date:  2017-01-09       Impact factor: 4.490

2.  Structure and biological importance of the Spn1-Spt6 interaction, and its regulatory role in nucleosome binding.

Authors:  Seth M McDonald; Devin Close; Hua Xin; Tim Formosa; Christopher P Hill
Journal:  Mol Cell       Date:  2010-11-25       Impact factor: 17.970

3.  A genetic screen for high copy number suppressors of the synthetic lethality between elg1Δ and srs2Δ in yeast.

Authors:  Inbal Gazy; Batia Liefshitz; Alex Bronstein; Oren Parnas; Nir Atias; Roded Sharan; Martin Kupiec
Journal:  G3 (Bethesda)       Date:  2013-05-20       Impact factor: 3.154

Review 4.  Cell growth- and differentiation-dependent regulation of RNA polymerase III transcription.

Authors:  Hélène Dumay-Odelot; Stéphanie Durrieu-Gaillard; Daniel Da Silva; Robert G Roeder; Martin Teichmann
Journal:  Cell Cycle       Date:  2010-09-01       Impact factor: 4.534

5.  Establishment and Maintenance of Chromatin Architecture Are Promoted Independently of Transcription by the Histone Chaperone FACT and H3-K56 Acetylation in Saccharomyces cerevisiae.

Authors:  Laura L McCullough; Trang H Pham; Timothy J Parnell; Zaily Connell; Mahesh B Chandrasekharan; David J Stillman; Tim Formosa
Journal:  Genetics       Date:  2019-01-24       Impact factor: 4.562

6.  Functional roles of the DNA-binding HMGB domain in the histone chaperone FACT in nucleosome reorganization.

Authors:  Laura L McCullough; Zaily Connell; Hua Xin; Vasily M Studitsky; Alexey V Feofanov; Maria E Valieva; Tim Formosa
Journal:  J Biol Chem       Date:  2018-03-07       Impact factor: 5.157

Review 7.  Structure-specific nucleic acid recognition by L-motifs and their diverse roles in expression and regulation of the genome.

Authors:  Roopa Thapar
Journal:  Biochim Biophys Acta       Date:  2015-03-04

8.  The FACT histone chaperone guides histone H4 into its nucleosomal conformation in Saccharomyces cerevisiae.

Authors:  Laura McCullough; Bryan Poe; Zaily Connell; Hua Xin; Tim Formosa
Journal:  Genetics       Date:  2013-07-05       Impact factor: 4.562

Review 9.  Regulation of pol III transcription by nutrient and stress signaling pathways.

Authors:  Robyn D Moir; Ian M Willis
Journal:  Biochim Biophys Acta       Date:  2012-11-16

Review 10.  The high mobility group box: the ultimate utility player of a cell.

Authors:  Christopher S Malarkey; Mair E A Churchill
Journal:  Trends Biochem Sci       Date:  2012-11-13       Impact factor: 13.807

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