Literature DB >> 23833181

The FACT histone chaperone guides histone H4 into its nucleosomal conformation in Saccharomyces cerevisiae.

Laura McCullough1, Bryan Poe, Zaily Connell, Hua Xin, Tim Formosa.   

Abstract

The pob3-Q308K mutation alters the small subunit of the Saccharomyces cerevisiae histone/nucleosome chaperone Facilitates Chromatin Transactions (FACT), causing defects in both transcription and DNA replication. We describe histone mutations that suppress some of these defects, providing new insight into the mechanism of FACT activity in vivo. FACT is primarily known for its ability to promote reorganization of nucleosomes into a more open form, but neither the pob3-Q308K mutation nor the compensating histone mutations affect this activity. Instead, purified mutant FACT complexes fail to release from nucleosomes efficiently, and the histone mutations correct this flaw. We confirm that pob3-T252E also suppresses pob3-Q308K and show that combining two suppressor mutations can be detrimental, further demonstrating the importance of balance between association and dissociation for efficient FACT:nucleosome interactions. To explain our results, we propose that histone H4 can adopt multiple conformations, most of which are incompatible with nucleosome assembly. FACT guides H4 to adopt appropriate conformations, and this activity can be enhanced or diminished by mutations in Pob3 or histones. FACT can therefore destabilize nucleosomes by favoring the reorganized state, but it can also promote assembly by tethering histones and DNA together and maintaining them in conformations that promote canonical nucleosome formation.

Entities:  

Keywords:  FACT suppressor; histone mutations; histone rearrangement; nucleosome reorganization

Mesh:

Substances:

Year:  2013        PMID: 23833181      PMCID: PMC3761294          DOI: 10.1534/genetics.113.153080

Source DB:  PubMed          Journal:  Genetics        ISSN: 0016-6731            Impact factor:   4.562


  54 in total

1.  Preparation of nucleosome core particle from recombinant histones.

Authors:  K Luger; T J Rechsteiner; T J Richmond
Journal:  Methods Enzymol       Date:  1999       Impact factor: 1.600

2.  Solution structure of the HMG protein NHP6A and its interaction with DNA reveals the structural determinants for non-sequence-specific binding.

Authors:  F H Allain; Y M Yen; J E Masse; P Schultze; T Dieckmann; R C Johnson; J Feigon
Journal:  EMBO J       Date:  1999-05-04       Impact factor: 11.598

3.  Genetic evidence for an interaction between SIR3 and histone H4 in the repression of the silent mating loci in Saccharomyces cerevisiae.

Authors:  L M Johnson; P S Kayne; E S Kahn; M Grunstein
Journal:  Proc Natl Acad Sci U S A       Date:  1990-08       Impact factor: 11.205

4.  Structural basis for the histone chaperone activity of Asf1.

Authors:  Christine M English; Melissa W Adkins; Joshua J Carson; Mair E A Churchill; Jessica K Tyler
Journal:  Cell       Date:  2006-11-03       Impact factor: 41.582

Review 5.  The histone chaperone FACT: structural insights and mechanisms for nucleosome reorganization.

Authors:  Duane D Winkler; Karolin Luger
Journal:  J Biol Chem       Date:  2011-03-24       Impact factor: 5.157

6.  The chromatin-specific transcription elongation factor FACT comprises human SPT16 and SSRP1 proteins.

Authors:  G Orphanides; W H Wu; W S Lane; M Hampsey; D Reinberg
Journal:  Nature       Date:  1999-07-15       Impact factor: 49.962

7.  Structural features of nucleosomes reorganized by yeast FACT and its HMG box component, Nhp6.

Authors:  Alison R Rhoades; Susan Ruone; Tim Formosa
Journal:  Mol Cell Biol       Date:  2004-05       Impact factor: 4.272

8.  Ty-mediated gene expression of the LYS2 and HIS4 genes of Saccharomyces cerevisiae is controlled by the same SPT genes.

Authors:  G Simchen; F Winston; C A Styles; G R Fink
Journal:  Proc Natl Acad Sci U S A       Date:  1984-04       Impact factor: 11.205

Review 9.  The FACT chromatin modulator: genetic and structure/function relationships.

Authors:  Richard A Singer; Gerald C Johnston
Journal:  Biochem Cell Biol       Date:  2004-08       Impact factor: 3.626

10.  A role for Chd1 and Set2 in negatively regulating DNA replication in Saccharomyces cerevisiae.

Authors:  Debabrata Biswas; Shinya Takahata; Hua Xin; Rinku Dutta-Biswas; Yaxin Yu; Tim Formosa; David J Stillman
Journal:  Genetics       Date:  2008-02-01       Impact factor: 4.562

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  7 in total

1.  Establishment and Maintenance of Chromatin Architecture Are Promoted Independently of Transcription by the Histone Chaperone FACT and H3-K56 Acetylation in Saccharomyces cerevisiae.

Authors:  Laura L McCullough; Trang H Pham; Timothy J Parnell; Zaily Connell; Mahesh B Chandrasekharan; David J Stillman; Tim Formosa
Journal:  Genetics       Date:  2019-01-24       Impact factor: 4.562

2.  Functional roles of the DNA-binding HMGB domain in the histone chaperone FACT in nucleosome reorganization.

Authors:  Laura L McCullough; Zaily Connell; Hua Xin; Vasily M Studitsky; Alexey V Feofanov; Maria E Valieva; Tim Formosa
Journal:  J Biol Chem       Date:  2018-03-07       Impact factor: 5.157

3.  The Abundant Histone Chaperones Spt6 and FACT Collaborate to Assemble, Inspect, and Maintain Chromatin Structure in Saccharomyces cerevisiae.

Authors:  Laura McCullough; Zaily Connell; Charisse Petersen; Tim Formosa
Journal:  Genetics       Date:  2015-09-28       Impact factor: 4.562

4.  Quantitative Analysis of Dynamic Protein Interactions during Transcription Reveals a Role for Casein Kinase II in Polymerase-associated Factor (PAF) Complex Phosphorylation and Regulation of Histone H2B Monoubiquitylation.

Authors:  Lynn Glowczewski Bedard; Raghuvar Dronamraju; Jenny L Kerschner; Gerald O Hunter; Elizabeth DeVlieger Axley; Asha K Boyd; Brian D Strahl; Amber L Mosley
Journal:  J Biol Chem       Date:  2016-05-03       Impact factor: 5.157

5.  The CENP-T/-W complex is a binding partner of the histone chaperone FACT.

Authors:  Lisa Prendergast; Sebastian Müller; Yiwei Liu; Hongda Huang; Florent Dingli; Damarys Loew; Isabelle Vassias; Dinshaw J Patel; Kevin F Sullivan; Geneviève Almouzni
Journal:  Genes Dev       Date:  2016-06-09       Impact factor: 11.361

6.  Hmo1 Protein Affects the Nucleosome Structure and Supports the Nucleosome Reorganization Activity of Yeast FACT.

Authors:  Daria K Malinina; Anastasiia L Sivkina; Anna N Korovina; Laura L McCullough; Tim Formosa; Mikhail P Kirpichnikov; Vasily M Studitsky; Alexey V Feofanov
Journal:  Cells       Date:  2022-09-20       Impact factor: 7.666

Review 7.  The role of FACT in managing chromatin: disruption, assembly, or repair?

Authors:  Tim Formosa; Fred Winston
Journal:  Nucleic Acids Res       Date:  2020-12-02       Impact factor: 16.971

  7 in total

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