Literature DB >> 20112283

Histone modifications: crucial elements for damage response and chromatin restoration.

Qianzheng Zhu1, Altaf A Wani.   

Abstract

Eukaryotic genomes are packaged into chromatin from repeated nucleosome arrays in which DNA sequences wrap around histones. Chromatin organization has profound influence on DNA-templated processes such as transcription, DNA replication, and repair. Recent studies have also revealed chromatin dynamics as an active contributor to diverse DNA damage responses (DDR). Here, we review recent progress in histone modification related to DDR and post-repair chromatin restoration at the sites of DNA damage. We discuss how the timing and features of histone modifications would provide the initial as well as the final guidance for DDR, and the prospect that modifications may challenge the epigenetic stability of repaired cells and serve as damage memory in chromatin.

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Year:  2010        PMID: 20112283      PMCID: PMC2930755          DOI: 10.1002/jcp.22060

Source DB:  PubMed          Journal:  J Cell Physiol        ISSN: 0021-9541            Impact factor:   6.384


  75 in total

Review 1.  Dynamic nucleosomes.

Authors:  Karolin Luger
Journal:  Chromosome Res       Date:  2006       Impact factor: 5.239

2.  Modifications of H3 and H4 during chromatin replication, nucleosome assembly, and histone exchange.

Authors:  Laura J Benson; Yongli Gu; Tatyana Yakovleva; Kevin Tong; Courtney Barrows; Christine L Strack; Richard G Cook; Craig A Mizzen; Anthony T Annunziato
Journal:  J Biol Chem       Date:  2006-02-07       Impact factor: 5.157

3.  Regulation of mitotic exit by the RNF8 ubiquitin ligase.

Authors:  V Plans; M Guerra-Rebollo; T M Thomson
Journal:  Oncogene       Date:  2007-09-03       Impact factor: 9.867

4.  RNF8 ubiquitylates histones at DNA double-strand breaks and promotes assembly of repair proteins.

Authors:  Niels Mailand; Simon Bekker-Jensen; Helene Faustrup; Fredrik Melander; Jiri Bartek; Claudia Lukas; Jiri Lukas
Journal:  Cell       Date:  2007-11-20       Impact factor: 41.582

5.  RNF8 transduces the DNA-damage signal via histone ubiquitylation and checkpoint protein assembly.

Authors:  Michael S Y Huen; Robert Grant; Isaac Manke; Kay Minn; Xiaochun Yu; Michael B Yaffe; Junjie Chen
Journal:  Cell       Date:  2007-11-20       Impact factor: 41.582

6.  The double bromodomain proteins Brd2 and Brd3 couple histone acetylation to transcription.

Authors:  Gary LeRoy; Brenden Rickards; S J Flint
Journal:  Mol Cell       Date:  2008-04-11       Impact factor: 17.970

7.  Ubc13/Rnf8 ubiquitin ligases control foci formation of the Rap80/Abraxas/Brca1/Brcc36 complex in response to DNA damage.

Authors:  Bin Wang; Stephen J Elledge
Journal:  Proc Natl Acad Sci U S A       Date:  2007-12-05       Impact factor: 11.205

8.  Orchestration of the DNA-damage response by the RNF8 ubiquitin ligase.

Authors:  Nadine K Kolas; J Ross Chapman; Shinichiro Nakada; Jarkko Ylanko; Richard Chahwan; Frédéric D Sweeney; Stephanie Panier; Megan Mendez; Jan Wildenhain; Timothy M Thomson; Laurence Pelletier; Stephen P Jackson; Daniel Durocher
Journal:  Science       Date:  2007-11-15       Impact factor: 47.728

9.  Phosphorylation of SDT repeats in the MDC1 N terminus triggers retention of NBS1 at the DNA damage-modified chromatin.

Authors:  Fredrik Melander; Simon Bekker-Jensen; Jacob Falck; Jiri Bartek; Niels Mailand; Jiri Lukas
Journal:  J Cell Biol       Date:  2008-04-14       Impact factor: 10.539

10.  Constitutive phosphorylation of MDC1 physically links the MRE11-RAD50-NBS1 complex to damaged chromatin.

Authors:  Christoph Spycher; Edward S Miller; Kelly Townsend; Lucijana Pavic; Nicholas A Morrice; Pavel Janscak; Grant S Stewart; Manuel Stucki
Journal:  J Cell Biol       Date:  2008-04-14       Impact factor: 10.539

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  34 in total

Review 1.  A peek into the complex realm of histone phosphorylation.

Authors:  Taraswi Banerjee; Debabrata Chakravarti
Journal:  Mol Cell Biol       Date:  2011-10-17       Impact factor: 4.272

Review 2.  DNA transcription and repair: a confluence.

Authors:  Robb E Moses; Bert W O'Malley
Journal:  J Biol Chem       Date:  2012-05-17       Impact factor: 5.157

Review 3.  Epigenetic regulation of immune cell functions during post-septic immunosuppression.

Authors:  William F Carson; Karen A Cavassani; Yali Dou; Steven L Kunkel
Journal:  Epigenetics       Date:  2011-03-01       Impact factor: 4.528

Review 4.  Mechanisms of DNA damage, repair, and mutagenesis.

Authors:  Nimrat Chatterjee; Graham C Walker
Journal:  Environ Mol Mutagen       Date:  2017-05-09       Impact factor: 3.216

5.  Modifications of H3K9me2, H3K36me3 and H4K20me2 may be involved in arsenic-induced genetic damage.

Authors:  Jun Li; Lu Ma; Xilan Wang; Daochuan Li; Qibing Zeng; Xiumei Xing; Chenggui Li; Lang Xie; Li Chen; Wen Chen; Aihua Zhang
Journal:  Toxicol Res (Camb)       Date:  2016-06-20       Impact factor: 3.524

Review 6.  Disordered proteinaceous machines.

Authors:  Monika Fuxreiter; Ágnes Tóth-Petróczy; Daniel A Kraut; Andreas Matouschek; Andreas T Matouschek; Roderick Y H Lim; Bin Xue; Lukasz Kurgan; Vladimir N Uversky
Journal:  Chem Rev       Date:  2014-04-04       Impact factor: 60.622

7.  Genetic and epigenetic determinants of inter-individual variability in responses to toxicants.

Authors:  Lauren Lewis; Gregory E Crawford; Terrence S Furey; Ivan Rusyn
Journal:  Curr Opin Toxicol       Date:  2017-09-12

Review 8.  Ischemia/Reperfusion.

Authors:  Theodore Kalogeris; Christopher P Baines; Maike Krenz; Ronald J Korthuis
Journal:  Compr Physiol       Date:  2016-12-06       Impact factor: 9.090

9.  Epigenetic events determine tissue-specific toxicity of inhalational exposure to the genotoxic chemical 1,3-butadiene in male C57BL/6J mice.

Authors:  Grace Chappell; Tetyana Kobets; Bridget O'Brien; Natalia Tretyakova; Dewakar Sangaraju; Oksana Kosyk; Kenneth G Sexton; Wanda Bodnar; Igor P Pogribny; Ivan Rusyn
Journal:  Toxicol Sci       Date:  2014-09-18       Impact factor: 4.849

Review 10.  Nucleotide Excision Repair: Finely Tuned Molecular Orchestra of Early Pre-incision Events.

Authors:  Qianzheng Zhu; Altaf A Wani
Journal:  Photochem Photobiol       Date:  2016-11-17       Impact factor: 3.421

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