Literature DB >> 20111033

IntOGen: integration and data mining of multidimensional oncogenomic data.

Gunes Gundem, Christian Perez-Llamas, Alba Jene-Sanz, Anna Kedzierska, Abul Islam, Jordi Deu-Pons, Simon J Furney, Nuria Lopez-Bigas.   

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Year:  2010        PMID： 20111033     DOI： 10.1038/nmeth0210-92

Source DB:  PubMed          Journal:  Nat Methods        ISSN： 1548-7091            Impact factor:   28.547


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  5 in total

1.  Progenetix.net: an online repository for molecular cytogenetic aberration data.

Authors:  M Baudis; M L Cleary
Journal:  Bioinformatics       Date:  2001-12       Impact factor: 6.937

2.  ONCOMINE: a cancer microarray database and integrated data-mining platform.

Authors:  Daniel R Rhodes; Jianjun Yu; K Shanker; Nandan Deshpande; Radhika Varambally; Debashis Ghosh; Terrence Barrette; Akhilesh Pandey; Arul M Chinnaiyan
Journal:  Neoplasia       Date:  2004 Jan-Feb       Impact factor: 5.715

Review 3.  Translating insights from the cancer genome into clinical practice.

Authors:  Lynda Chin; Joe W Gray
Journal:  Nature       Date:  2008-04-03       Impact factor: 49.962

Review 4.  The impact of translocations and gene fusions on cancer causation.

Authors:  Felix Mitelman; Bertil Johansson; Fredrik Mertens
Journal:  Nat Rev Cancer       Date:  2007-03-15       Impact factor: 60.716

5.  Comprehensive genomic characterization defines human glioblastoma genes and core pathways.

Authors: 
Journal:  Nature       Date:  2008-09-04       Impact factor: 49.962
  5 in total
  55 in total

1.  Algorithmic methods to infer the evolutionary trajectories in cancer progression.

Authors:  Giulio Caravagna; Alex Graudenzi; Daniele Ramazzotti; Rebeca Sanz-Pamplona; Luca De Sano; Giancarlo Mauri; Victor Moreno; Marco Antoniotti; Bud Mishra
Journal:  Proc Natl Acad Sci U S A       Date:  2016-06-28       Impact factor: 11.205

Review 2.  Principles and methods of integrative genomic analyses in cancer.

Authors:  Vessela N Kristensen; Ole Christian Lingjærde; Hege G Russnes; Hans Kristian M Vollan; Arnoldo Frigessi; Anne-Lise Børresen-Dale
Journal:  Nat Rev Cancer       Date:  2014-05       Impact factor: 60.716

Review 3.  Reuse of public genome-wide gene expression data.

Authors:  Johan Rung; Alvis Brazma
Journal:  Nat Rev Genet       Date:  2012-12-27       Impact factor: 53.242

4.  Integrative analysis of complex cancer genomics and clinical profiles using the cBioPortal.

Authors:  Jianjiong Gao; Bülent Arman Aksoy; Ugur Dogrusoz; Gideon Dresdner; Benjamin Gross; S Onur Sumer; Yichao Sun; Anders Jacobsen; Rileen Sinha; Erik Larsson; Ethan Cerami; Chris Sander; Nikolaus Schultz
Journal:  Sci Signal       Date:  2013-04-02       Impact factor: 8.192

5.  Circulating tumor cells exit circulation while maintaining multicellularity, augmenting metastatic potential.

Authors:  Tyler A Allen; Dana Asad; Emmanuel Amu; M Taylor Hensley; Jhon Cores; Adam Vandergriff; Junnan Tang; Phuong-Uyen Dinh; Deliang Shen; Li Qiao; Teng Su; Shiqi Hu; Hongxia Liang; Heather Shive; Erin Harrell; Connor Campbell; Xinxia Peng; Jeffrey A Yoder; Ke Cheng
Journal:  J Cell Sci       Date:  2019-09-09       Impact factor: 5.285

6.  PANOPLY: Omics-Guided Drug Prioritization Method Tailored to an Individual Patient.

Authors:  Krishna R Kalari; Jason P Sinnwell; Kevin J Thompson; Xiaojia Tang; Erin E Carlson; Jia Yu; Peter T Vedell; James N Ingle; Richard M Weinshilboum; Judy C Boughey; Liewei Wang; Matthew P Goetz; Vera Suman
Journal:  JCO Clin Cancer Inform       Date:  2018-12

Review 7.  Computational methods and resources for the interpretation of genomic variants in cancer.

Authors:  Rui Tian; Malay K Basu; Emidio Capriotti
Journal:  BMC Genomics       Date:  2015-06-18       Impact factor: 3.969

Review 8.  Standards and Guidelines for the Interpretation and Reporting of Sequence Variants in Cancer: A Joint Consensus Recommendation of the Association for Molecular Pathology, American Society of Clinical Oncology, and College of American Pathologists.

Authors:  Marilyn M Li; Michael Datto; Eric J Duncavage; Shashikant Kulkarni; Neal I Lindeman; Somak Roy; Apostolia M Tsimberidou; Cindy L Vnencak-Jones; Daynna J Wolff; Anas Younes; Marina N Nikiforova
Journal:  J Mol Diagn       Date:  2017-01       Impact factor: 5.568

Review 9.  The mini-driver model of polygenic cancer evolution.

Authors:  Francesc Castro-Giner; Peter Ratcliffe; Ian Tomlinson
Journal:  Nat Rev Cancer       Date:  2015-10-12       Impact factor: 60.716

10.  The cBio cancer genomics portal: an open platform for exploring multidimensional cancer genomics data.

Authors:  Ethan Cerami; Jianjiong Gao; Ugur Dogrusoz; Benjamin E Gross; Selcuk Onur Sumer; Bülent Arman Aksoy; Anders Jacobsen; Caitlin J Byrne; Michael L Heuer; Erik Larsson; Yevgeniy Antipin; Boris Reva; Arthur P Goldberg; Chris Sander; Nikolaus Schultz
Journal:  Cancer Discov       Date:  2012-05       Impact factor: 39.397
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