Literature DB >> 11751233

Progenetix.net: an online repository for molecular cytogenetic aberration data.

M Baudis1, M L Cleary.   

Abstract

UNLABELLED: Through sequencing projects and, more recently, array-based expression analysis experiments, a wealth of genetic data has become accessible via online resources. In contrast, few of the (molecular-) cytogenetic aberration data collected in the last decades are available in a format suitable for data mining procedures. www.progenetix.net is a new online repository for previously published chromosomal aberration data, allowing the addition of band-specific information about chromosomal imbalances to oncologic data analysis efforts. AVAILABILITY: http://www.progenetix.net CONTACT: mbaudis@stanford.edu

Mesh：

Year:  2001        PMID： 11751233     DOI： 10.1093/bioinformatics/17.12.1228

Source DB:  PubMed          Journal:  Bioinformatics        ISSN： 1367-4803            Impact factor:   6.937


  76 in total

1.  IntOGen: integration and data mining of multidimensional oncogenomic data.

Authors:  Gunes Gundem; Christian Perez-Llamas; Alba Jene-Sanz; Anna Kedzierska; Abul Islam; Jordi Deu-Pons; Simon J Furney; Nuria Lopez-Bigas
Journal:  Nat Methods       Date:  2010-02       Impact factor: 28.547

2.  DNA copy number alterations in central primitive neuroectodermal tumors and tumors of the pineal region: an international individual patient data meta-analysis.

Authors:  André O von Bueren; Joachim Gerss; Christian Hagel; Haoyang Cai; Marc Remke; Martin Hasselblatt; Burt G Feuerstein; Sarah Pernet; Olivier Delattre; Andrey Korshunov; Stefan Rutkowski; Stefan M Pfister; Michael Baudis
Journal:  J Neurooncol       Date:  2012-07-07       Impact factor: 4.130

3.  A double-layered mixture model for the joint analysis of DNA copy number and gene expression data.

Authors:  Hyungwon Choi; Zhaohui S Qin; Debashis Ghosh
Journal:  J Comput Biol       Date:  2010-02       Impact factor: 1.479

4.  Chromosomal changes characterize head and neck cancer with poor prognosis.

Authors:  Verena L Bauer; Herbert Braselmann; Michael Henke; Dominik Mattern; Axel Walch; Kristian Unger; Michael Baudis; Silke Lassmann; Reinhard Huber; Johannes Wienberg; Martin Werner; Horst F Zitzelsberger
Journal:  J Mol Med (Berl)       Date:  2008-09-23       Impact factor: 4.599

5.  Selection and adaptation during metastatic cancer progression.

Authors:  Christoph A Klein
Journal:  Nature       Date:  2013-09-19       Impact factor: 49.962

6.  Three dysregulated miRNAs control kallikrein 10 expression and cell proliferation in ovarian cancer.

Authors:  N M A White; T-F F Chow; S Mejia-Guerrero; M Diamandis; Y Rofael; H Faragalla; M Mankaruous; M Gabril; A Girgis; G M Yousef
Journal:  Br J Cancer       Date:  2010-03-30       Impact factor: 7.640

7.  A rapid, sensitive, reproducible and cost-effective method for mutation profiling of colon cancer and metastatic lymph nodes.

Authors:  Debora Fumagalli; Patrick G Gavin; Yusuke Taniyama; Seung-Il Kim; Hyun-Joo Choi; Soonmyung Paik; Katherine L Pogue-Geile
Journal:  BMC Cancer       Date:  2010-03-16       Impact factor: 4.430

8.  Copy number analysis identifies novel interactions between genomic loci in ovarian cancer.

Authors:  Kylie L Gorringe; Joshy George; Michael S Anglesio; Manasa Ramakrishna; Dariush Etemadmoghadam; Prue Cowin; Anita Sridhar; Louise H Williams; Samantha E Boyle; Nozomu Yanaihara; Aikou Okamoto; Mitsuyoshi Urashima; Gordon K Smyth; Ian G Campbell; David D L Bowtell
Journal:  PLoS One       Date:  2010-09-10       Impact factor: 3.240

9.  The apoptotic machinery as a biological complex system: analysis of its omics and evolution, identification of candidate genes for fourteen major types of cancer, and experimental validation in CML and neuroblastoma.

Authors:  Cinzia Di Pietro; Marco Ragusa; Davide Barbagallo; Laura R Duro; Maria R Guglielmino; Alessandra Majorana; Rosario Angelica; Marina Scalia; Luisa Statello; Loredana Salito; Luisa Tomasello; Salvo Pernagallo; Salvo Valenti; Vito D'Agostino; Patrizio Triberio; Igor Tandurella; Giuseppe A Palumbo; Piera La Cava; Viviana Cafiso; Taschia Bertuccio; Maria Santagati; Giovanni Li Destri; Salvatore Lanzafame; Francesco Di Raimondo; Stefania Stefani; Bud Mishra; Michele Purrello
Journal:  BMC Med Genomics       Date:  2009-04-30       Impact factor: 3.063

10.  Classification and feature selection algorithms for multi-class CGH data.

Authors:  Jun Liu; Sanjay Ranka; Tamer Kahveci
Journal:  Bioinformatics       Date:  2008-07-01       Impact factor: 6.937
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