Literature DB >> 26456849

The mini-driver model of polygenic cancer evolution.

Francesc Castro-Giner1, Peter Ratcliffe2, Ian Tomlinson1.   

Abstract

Much of cancer genetics research has focused on the identification of the most-important somatic mutations ('major drivers') that cause tumour growth. However, many mutations found in cancer might not be major drivers or 'passenger' mutations, but instead might have relatively weak tumour-promoting effects. Our aim is to highlight the existence of these mutations (termed 'mini drivers' herein), as multiple mini-driver mutations might substitute for a major-driver change, especially in the presence of genomic instability or high mutagen exposure. The mini-driver model has clinical implications: for example, the effects of therapeutically targeting such genes may be limited. However, the main importance of the model lies in helping to provide a complete understanding of tumorigenesis, especially as we anticipate that an increasing number of mini-driver mutations will be found by cancer genome sequencing.

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Year:  2015        PMID: 26456849     DOI: 10.1038/nrc3999

Source DB:  PubMed          Journal:  Nat Rev Cancer        ISSN: 1474-175X            Impact factor:   60.716


  72 in total

Review 1.  Genetic architecture of cancer and other complex diseases: lessons learned and future directions.

Authors:  Lucia A Hindorff; Elizabeth M Gillanders; Teri A Manolio
Journal:  Carcinogenesis       Date:  2011-03-31       Impact factor: 4.944

Review 2.  Lessons from the cancer genome.

Authors:  Levi A Garraway; Eric S Lander
Journal:  Cell       Date:  2013-03-28       Impact factor: 41.582

3.  Principles and strategies for developing network models in cancer.

Authors:  Dana Pe'er; Nir Hacohen
Journal:  Cell       Date:  2011-03-18       Impact factor: 41.582

Review 4.  Cancer as an evolutionary and ecological process.

Authors:  Lauren M F Merlo; John W Pepper; Brian J Reid; Carlo C Maley
Journal:  Nat Rev Cancer       Date:  2006-11-16       Impact factor: 60.716

5.  Preexistence and clonal selection of MET amplification in EGFR mutant NSCLC.

Authors:  Alexa B Turke; Kreshnik Zejnullahu; Yi-Long Wu; Youngchul Song; Dora Dias-Santagata; Eugene Lifshits; Luca Toschi; Andrew Rogers; Tony Mok; Lecia Sequist; Neal I Lindeman; Carly Murphy; Sara Akhavanfard; Beow Y Yeap; Yun Xiao; Marzia Capelletti; A John Iafrate; Charles Lee; James G Christensen; Jeffrey A Engelman; Pasi A Jänne
Journal:  Cancer Cell       Date:  2010-01-19       Impact factor: 31.743

Review 6.  Tumor heterogeneity: causes and consequences.

Authors:  Andriy Marusyk; Kornelia Polyak
Journal:  Biochim Biophys Acta       Date:  2009-11-18

Review 7.  The cancer genome.

Authors:  Michael R Stratton; Peter J Campbell; P Andrew Futreal
Journal:  Nature       Date:  2009-04-09       Impact factor: 49.962

8.  Genome-wide analysis of noncoding regulatory mutations in cancer.

Authors:  Nils Weinhold; Anders Jacobsen; Nikolaus Schultz; Chris Sander; William Lee
Journal:  Nat Genet       Date:  2014-09-28       Impact factor: 38.330

9.  Functional impact bias reveals cancer drivers.

Authors:  Abel Gonzalez-Perez; Nuria Lopez-Bigas
Journal:  Nucleic Acids Res       Date:  2012-08-16       Impact factor: 16.971

10.  Genome-wide diet-gene interaction analyses for risk of colorectal cancer.

Authors:  Jane C Figueiredo; Li Hsu; Carolyn M Hutter; Yi Lin; Peter T Campbell; John A Baron; Sonja I Berndt; Shuo Jiao; Graham Casey; Barbara Fortini; Andrew T Chan; Michelle Cotterchio; Mathieu Lemire; Steven Gallinger; Tabitha A Harrison; Loic Le Marchand; Polly A Newcomb; Martha L Slattery; Bette J Caan; Christopher S Carlson; Brent W Zanke; Stephanie A Rosse; Hermann Brenner; Edward L Giovannucci; Kana Wu; Jenny Chang-Claude; Stephen J Chanock; Keith R Curtis; David Duggan; Jian Gong; Robert W Haile; Richard B Hayes; Michael Hoffmeister; John L Hopper; Mark A Jenkins; Laurence N Kolonel; Conghui Qu; Anja Rudolph; Robert E Schoen; Fredrick R Schumacher; Daniela Seminara; Deanna L Stelling; Stephen N Thibodeau; Mark Thornquist; Greg S Warnick; Brian E Henderson; Cornelia M Ulrich; W James Gauderman; John D Potter; Emily White; Ulrike Peters
Journal:  PLoS Genet       Date:  2014-04-17       Impact factor: 5.917

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  42 in total

1.  Comparison of algorithms for the detection of cancer drivers at subgene resolution.

Authors:  Eduard Porta-Pardo; Atanas Kamburov; David Tamborero; Tirso Pons; Daniela Grases; Alfonso Valencia; Nuria Lopez-Bigas; Gad Getz; Adam Godzik
Journal:  Nat Methods       Date:  2017-07-17       Impact factor: 28.547

2.  Estimating growth patterns and driver effects in tumor evolution from individual samples.

Authors:  Leonidas Salichos; William Meyerson; Jonathan Warrell; Mark Gerstein
Journal:  Nat Commun       Date:  2020-02-05       Impact factor: 14.919

3.  The Damaging Effect of Passenger Mutations on Cancer Progression.

Authors:  Christopher D McFarland; Julia A Yaglom; Jonathan W Wojtkowiak; Jacob G Scott; David L Morse; Michael Y Sherman; Leonid A Mirny
Journal:  Cancer Res       Date:  2017-05-23       Impact factor: 12.701

Review 4.  A step-by-step microRNA guide to cancer development and metastasis.

Authors:  Georgios S Markopoulos; Eugenia Roupakia; Maria Tokamani; Evangelia Chavdoula; Maria Hatziapostolou; Christos Polytarchou; Kenneth B Marcu; Athanasios G Papavassiliou; Raphael Sandaltzopoulos; Evangelos Kolettas
Journal:  Cell Oncol (Dordr)       Date:  2017-07-26       Impact factor: 6.730

Review 5.  Pancreatic cancer biology and genetics from an evolutionary perspective.

Authors:  Alvin Makohon-Moore; Christine A Iacobuzio-Donahue
Journal:  Nat Rev Cancer       Date:  2016-07-22       Impact factor: 60.716

Review 6.  Fanconi anaemia and cancer: an intricate relationship.

Authors:  Grzegorz Nalepa; D Wade Clapp
Journal:  Nat Rev Cancer       Date:  2018-01-29       Impact factor: 60.716

7.  Passenger Mutations in More Than 2,500 Cancer Genomes: Overall Molecular Functional Impact and Consequences.

Authors:  Sushant Kumar; Jonathan Warrell; Shantao Li; Patrick D McGillivray; William Meyerson; Leonidas Salichos; Arif Harmanci; Alexander Martinez-Fundichely; Calvin W Y Chan; Morten Muhlig Nielsen; Lucas Lochovsky; Yan Zhang; Xiaotong Li; Shaoke Lou; Jakob Skou Pedersen; Carl Herrmann; Gad Getz; Ekta Khurana; Mark B Gerstein
Journal:  Cell       Date:  2020-02-20       Impact factor: 41.582

8.  Non-coding genetic variation in cancer.

Authors:  Tawny N Cuykendall; Mark A Rubin; Ekta Khurana
Journal:  Curr Opin Syst Biol       Date:  2017-03-04

Review 9.  Non-coding driver mutations in human cancer.

Authors:  Kerryn Elliott; Erik Larsson
Journal:  Nat Rev Cancer       Date:  2021-07-06       Impact factor: 60.716

10.  Heterozygous colon cancer-associated mutations of SAMHD1 have functional significance.

Authors:  Matilda Rentoft; Kristoffer Lindell; Phong Tran; Anna Lena Chabes; Robert J Buckland; Danielle L Watt; Lisette Marjavaara; Anna Karin Nilsson; Beatrice Melin; Johan Trygg; Erik Johansson; Andrei Chabes
Journal:  Proc Natl Acad Sci U S A       Date:  2016-04-11       Impact factor: 11.205

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