Literature DB >> 20103779

Hematopoiesis and its disorders: a systems biology approach.

Zakary L Whichard1, Casim A Sarkar, Marek Kimmel, Seth J Corey.   

Abstract

Scientists have traditionally studied complex biologic systems by reducing them to simple building blocks. Genome sequencing, high-throughput screening, and proteomics have, however, generated large datasets, revealing a high level of complexity in components and interactions. Systems biology embraces this complexity with a combination of mathematical, engineering, and computational tools for constructing and validating models of biologic phenomena. The validity of mathematical modeling in hematopoiesis was established early by the pioneering work of Till and McCulloch. In reviewing more recent papers, we highlight deterministic, stochastic, statistical, and network-based models that have been used to better understand a range of topics in hematopoiesis, including blood cell production, the periodicity of cyclical neutropenia, stem cell production in response to cytokine administration, and the emergence of imatinib resistance in chronic myeloid leukemia. Future advances require technologic improvements in computing power, imaging, and proteomics as well as greater collaboration between experimentalists and modelers. Altogether, systems biology will improve our understanding of normal and abnormal hematopoiesis, better define stem cells and their daughter cells, and potentially lead to more effective therapies.

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Year:  2010        PMID: 20103779      PMCID: PMC2845894          DOI: 10.1182/blood-2009-08-215798

Source DB:  PubMed          Journal:  Blood        ISSN: 0006-4971            Impact factor:   22.113


  81 in total

1.  Stochastic model revisited.

Authors:  M Ogawa
Journal:  Int J Hematol       Date:  1999-01       Impact factor: 2.490

2.  Emergence of a subpopulation in a computational model of tumor growth.

Authors:  A R Kansal; S Torquato; E A Chiocca; T S Deisboeck
Journal:  J Theor Biol       Date:  2000-12-07       Impact factor: 2.691

Review 3.  A new approach to decoding life: systems biology.

Authors:  T Ideker; T Galitski; L Hood
Journal:  Annu Rev Genomics Hum Genet       Date:  2001       Impact factor: 8.929

Review 4.  Embracing complexity: organicism for the 21st century.

Authors:  S F Gilbert; S Sarkar
Journal:  Dev Dyn       Date:  2000-09       Impact factor: 3.780

5.  A comprehensive analysis of protein-protein interactions in Saccharomyces cerevisiae.

Authors:  P Uetz; L Giot; G Cagney; T A Mansfield; R S Judson; J R Knight; D Lockshon; V Narayan; M Srinivasan; P Pochart; A Qureshi-Emili; Y Li; B Godwin; D Conover; T Kalbfleisch; G Vijayadamodar; M Yang; M Johnston; S Fields; J M Rothberg
Journal:  Nature       Date:  2000-02-10       Impact factor: 49.962

6.  Distinct types of diffuse large B-cell lymphoma identified by gene expression profiling.

Authors:  A A Alizadeh; M B Eisen; R E Davis; C Ma; I S Lossos; A Rosenwald; J C Boldrick; H Sabet; T Tran; X Yu; J I Powell; L Yang; G E Marti; T Moore; J Hudson; L Lu; D B Lewis; R Tibshirani; G Sherlock; W C Chan; T C Greiner; D D Weisenburger; J O Armitage; R Warnke; R Levy; W Wilson; M R Grever; J C Byrd; D Botstein; P O Brown; L M Staudt
Journal:  Nature       Date:  2000-02-03       Impact factor: 49.962

7.  A role for G-CSF receptor signaling in the regulation of hematopoietic cell function but not lineage commitment or differentiation.

Authors:  C L Semerad; J Poursine-Laurent; F Liu; D C Link
Journal:  Immunity       Date:  1999-08       Impact factor: 31.745

8.  Circadian variation of granulocyte colony stimulating factor levels in man.

Authors:  B Jilma; N Hergovich; P Stohlawetz; H G Eichler; P Bauer; O F Wagner
Journal:  Br J Haematol       Date:  1999-08       Impact factor: 6.998

9.  A mathematical model of the chemotherapeutic treatment of acute myeloblastic leukemia.

Authors:  S I Rubinow; J L Lebowitz
Journal:  Biophys J       Date:  1976-11       Impact factor: 4.033

10.  A mathematical model of the acute myeloblastic leukemic state in man.

Authors:  S I Rubinow; J L Lebowitz
Journal:  Biophys J       Date:  1976-08       Impact factor: 4.033

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  22 in total

Review 1.  Quantitative modeling of chronic myeloid leukemia: insights from radiobiology.

Authors:  Tomas Radivoyevitch; Lynn Hlatky; Julian Landaw; Rainer K Sachs
Journal:  Blood       Date:  2012-02-21       Impact factor: 22.113

Review 2.  Long-term single-cell imaging of mammalian stem cells.

Authors:  Timm Schroeder
Journal:  Nat Methods       Date:  2011-03-30       Impact factor: 28.547

3.  A model to explain specific cellular communications and cellular harmony:- a hypothesis of coupled cells and interactive coupling molecules.

Authors:  Cyril J Craven
Journal:  Theor Biol Med Model       Date:  2014-09-14       Impact factor: 2.432

4.  A multicellular basis for the origination of blast crisis in chronic myeloid leukemia.

Authors:  Rainer K Sachs; Kerstin Johnsson; Philip Hahnfeldt; Janet Luo; Allen Chen; Lynn Hlatky
Journal:  Cancer Res       Date:  2011-04-12       Impact factor: 12.701

5.  Can systems biology approach help in finding more effective treatment for acute myeloid leukemia?

Authors:  Anuradha Vaidya
Journal:  Syst Synth Biol       Date:  2014-04-16

6.  Predicting Time to Relapse in Acute Myeloid Leukemia through Stochastic Modeling of Minimal Residual Disease Based on Clonality Data.

Authors:  Khanh N Dinh; Roman Jaksik; Seth J Corey; Marek Kimmel
Journal:  Comput Syst Oncol       Date:  2021-09-14

7.  Differentially regulated splice variants and systems biology analysis of Kaposi's sarcoma-associated herpesvirus-infected lymphatic endothelial cells.

Authors:  Ting-Yu Chang; Yu-Hsuan Wu; Cheng-Chung Cheng; Hsei-Wei Wang
Journal:  Nucleic Acids Res       Date:  2011-06-06       Impact factor: 16.971

8.  Clinical Applications of Omics Technologies on ZHENG Differentiation Research in Traditional Chinese Medicine.

Authors:  Ya-Nan Song; Gui-Biao Zhang; Yong-Yu Zhang; Shi-Bing Su
Journal:  Evid Based Complement Alternat Med       Date:  2013-06-18       Impact factor: 2.629

9.  Systems biology of meridians, acupoints, and chinese herbs in disease.

Authors:  Li-Ling Lin; Ya-Hui Wang; Chi-Yu Lai; Chan-Lao Chau; Guan-Chin Su; Chun-Yi Yang; Shu-Ying Lou; Szu-Kai Chen; Kuan-Hao Hsu; Yen-Ling Lai; Wei-Ming Wu; Jian-Long Huang; Chih-Hsin Liao; Hsueh-Fen Juan
Journal:  Evid Based Complement Alternat Med       Date:  2012-10-18       Impact factor: 2.629

10.  Stochastic Hypothesis of Transition from Inborn Neutropenia to AML: Interactions of Cell Population Dynamics and Population Genetics.

Authors:  Marek Kimmel; Seth Corey
Journal:  Front Oncol       Date:  2013-04-29       Impact factor: 6.244

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