Literature DB >> 20097869

Cooperation of multiple chromatin modifications can generate unanticipated stability of epigenetic States in Arabidopsis.

Tuncay Baubec1, Huy Q Dinh, Ales Pecinka, Branislava Rakic, Wilfried Rozhon, Bonnie Wohlrab, Arndt von Haeseler, Ortrun Mittelsten Scheid.   

Abstract

Epigenetic changes of gene expression can potentially be reversed by developmental programs, genetic manipulation, or pharmacological interference. However, a case of transcriptional gene silencing, originally observed in tetraploid Arabidopsis thaliana plants, created an epiallele resistant to many mutations or inhibitor treatments that activate many other suppressed genes. This raised the question about the molecular basis of this extreme stability. A combination of forward and reverse genetics and drug application provides evidence for an epigenetic double lock that is only alleviated upon the simultaneous removal of both DNA methylation and histone methylation. Therefore, the cooperation of multiple chromatin modifications can generate unanticipated stability of epigenetic states and contributes to heritable diversity of gene expression patterns.

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Year:  2010        PMID: 20097869      PMCID: PMC2828703          DOI: 10.1105/tpc.109.072819

Source DB:  PubMed          Journal:  Plant Cell        ISSN: 1040-4651            Impact factor:   11.277


  69 in total

1.  Release of epigenetic gene silencing by trans-acting mutations in Arabidopsis.

Authors:  O Mittelsten Scheid; K Afsar; J Paszkowski
Journal:  Proc Natl Acad Sci U S A       Date:  1998-01-20       Impact factor: 11.205

Review 2.  Epigenetic germline inheritance.

Authors:  Suyinn Chong; Emma Whitelaw
Journal:  Curr Opin Genet Dev       Date:  2004-12       Impact factor: 5.578

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Journal:  Science       Date:  1966-06-10       Impact factor: 47.728

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Authors:  T Mengiste; P Amedeo; J Paszkowski
Journal:  Plant J       Date:  1997-10       Impact factor: 6.417

5.  Genomic sequencing.

Authors:  G M Church; W Gilbert
Journal:  Proc Natl Acad Sci U S A       Date:  1984-04       Impact factor: 11.205

6.  A histone methylation-dependent DNA methylation pathway is uniquely impaired by deficiency in Arabidopsis S-adenosylhomocysteine hydrolase.

Authors:  Lori Mull; Michelle L Ebbs; Judith Bender
Journal:  Genetics       Date:  2006-09-01       Impact factor: 4.562

7.  Epigenetic silencing of RNA polymerase I transcription: a role for DNA methylation and histone modification in nucleolar dominance.

Authors:  Z J Chen; C S Pikaard
Journal:  Genes Dev       Date:  1997-08-15       Impact factor: 11.361

8.  Maintenance of genomic methylation requires a SWI2/SNF2-like protein.

Authors:  J A Jeddeloh; T L Stokes; E J Richards
Journal:  Nat Genet       Date:  1999-05       Impact factor: 38.330

9.  RNAi, DRD1, and histone methylation actively target developmentally important non-CG DNA methylation in arabidopsis.

Authors:  Simon W-L Chan; Ian R Henderson; Xiaoyu Zhang; Govind Shah; Jason S-C Chien; Steven E Jacobsen
Journal:  PLoS Genet       Date:  2006-06-02       Impact factor: 5.917

10.  Chromatin immunoprecipitation: optimization, quantitative analysis and data normalization.

Authors:  Max Haring; Sascha Offermann; Tanja Danker; Ina Horst; Christoph Peterhansel; Maike Stam
Journal:  Plant Methods       Date:  2007-09-24       Impact factor: 4.993

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  33 in total

1.  Inhibition of SAH-hydrolase activity during seed germination leads to deregulation of flowering genes and altered flower morphology in tobacco.

Authors:  Jaroslav Fulneček; Roman Matyášek; Ivan Votruba; Antonín Holý; Kateřina Křížová; Aleš Kovařík
Journal:  Mol Genet Genomics       Date:  2011-01-28       Impact factor: 3.291

2.  Transgene expression and transgene-induced silencing in diploid and autotetraploid Arabidopsis.

Authors:  Thomas E Finn; Lei Wang; David Smolilo; Neil A Smith; Rosemary White; Abed Chaudhury; Elizabeth S Dennis; Ming-Bo Wang
Journal:  Genetics       Date:  2010-11-15       Impact factor: 4.562

3.  Arabidopsis SET DOMAIN GROUP2 is required for H3K4 trimethylation and is crucial for both sporophyte and gametophyte development.

Authors:  Alexandre Berr; Emily J McCallum; Rozenn Ménard; Denise Meyer; Jörg Fuchs; Aiwu Dong; Wen-Hui Shen
Journal:  Plant Cell       Date:  2010-10-29       Impact factor: 11.277

Review 4.  Chemical probes in plant epigenetics studies.

Authors:  Huiming Zhang; Bangshing Wang; Cheng-Guo Duan; Jian-Kang Zhu
Journal:  Plant Signal Behav       Date:  2013-06-27

5.  A double lock on polyploidy-associated epigenetic gene silencing.

Authors:  Nancy A Eckardt
Journal:  Plant Cell       Date:  2010-01-22       Impact factor: 11.277

Review 6.  Epigenetic regulation in plants.

Authors:  Craig S Pikaard; Ortrun Mittelsten Scheid
Journal:  Cold Spring Harb Perspect Biol       Date:  2014-12-01       Impact factor: 10.005

Review 7.  Stress-induced chromatin changes in plants: of memories, metabolites and crop improvement.

Authors:  Cécile Vriet; Lars Hennig; Christophe Laloi
Journal:  Cell Mol Life Sci       Date:  2015-01-13       Impact factor: 9.261

8.  Epigenetic basis of morphological variation and phenotypic plasticity in Arabidopsis thaliana.

Authors:  Rik Kooke; Frank Johannes; René Wardenaar; Frank Becker; Mathilde Etcheverry; Vincent Colot; Dick Vreugdenhil; Joost J B Keurentjes
Journal:  Plant Cell       Date:  2015-02-10       Impact factor: 11.277

9.  Sulfamethazine suppresses epigenetic silencing in Arabidopsis by impairing folate synthesis.

Authors:  Huiming Zhang; Xiangyang Deng; Daisuke Miki; Sean Cutler; Honggui La; Yueh-Ju Hou; Jeeeun Oh; Jian-Kang Zhu
Journal:  Plant Cell       Date:  2012-03-23       Impact factor: 11.277

Review 10.  Epigenetic and developmental regulation in plant polyploids.

Authors:  Qingxin Song; Z Jeffrey Chen
Journal:  Curr Opin Plant Biol       Date:  2015-03-10       Impact factor: 7.834

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