Literature DB >> 20085698

Making cellular memories.

Devin R Burrill1, Pamela A Silver.   

Abstract

The induction of a protracted response to a brief stimulus is a form of cellular memory. Here we describe the role of transcriptional regulation in both natural and synthetic memory networks and discuss the potential applications of engineered memory networks in medicine and industrial biotechnology.

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Mesh:

Year:  2010        PMID: 20085698      PMCID: PMC2882105          DOI: 10.1016/j.cell.2009.12.034

Source DB:  PubMed          Journal:  Cell        ISSN: 0092-8674            Impact factor:   41.582


  32 in total

1.  Construction of a genetic toggle switch in Escherichia coli.

Authors:  T S Gardner; C R Cantor; J J Collins
Journal:  Nature       Date:  2000-01-20       Impact factor: 49.962

2.  Positive feedback in eukaryotic gene networks: cell differentiation by graded to binary response conversion.

Authors:  A Becskei; B Séraphin; L Serrano
Journal:  EMBO J       Date:  2001-05-15       Impact factor: 11.598

3.  A positive-feedback-based bistable 'memory module' that governs a cell fate decision.

Authors:  Wen Xiong; James E Ferrell
Journal:  Nature       Date:  2003-11-27       Impact factor: 49.962

4.  Programmable cells: interfacing natural and engineered gene networks.

Authors:  Hideki Kobayashi; Mads Kaern; Michihiro Araki; Kristy Chung; Timothy S Gardner; Charles R Cantor; James J Collins
Journal:  Proc Natl Acad Sci U S A       Date:  2004-05-24       Impact factor: 11.205

5.  Core transcriptional regulatory circuitry in human embryonic stem cells.

Authors:  Laurie A Boyer; Tong Ihn Lee; Megan F Cole; Sarah E Johnstone; Stuart S Levine; Jacob P Zucker; Matthew G Guenther; Roshan M Kumar; Heather L Murray; Richard G Jenner; David K Gifford; Douglas A Melton; Rudolf Jaenisch; Richard A Young
Journal:  Cell       Date:  2005-09-23       Impact factor: 41.582

6.  Positive-feedback loops as a flexible biological module.

Authors:  Nicholas T Ingolia; Andrew W Murray
Journal:  Curr Biol       Date:  2007-03-29       Impact factor: 10.834

7.  Regulation of repressor expression in lambda.

Authors:  H Eisen; P Brachet; L Pereira da Silva; F Jacob
Journal:  Proc Natl Acad Sci U S A       Date:  1970-07       Impact factor: 11.205

8.  A model for a bistable biochemical trigger of mitosis.

Authors:  C D Thron
Journal:  Biophys Chem       Date:  1996-01       Impact factor: 2.352

9.  An engineered epigenetic transgene switch in mammalian cells.

Authors:  Beat P Kramer; Alessandro Usseglio Viretta; Marie Daoud-El-Baba; Dominique Aubel; Wilfried Weber; Martin Fussenegger
Journal:  Nat Biotechnol       Date:  2004-06-06       Impact factor: 54.908

10.  Numerical analysis of a comprehensive model of M-phase control in Xenopus oocyte extracts and intact embryos.

Authors:  B Novak; J J Tyson
Journal:  J Cell Sci       Date:  1993-12       Impact factor: 5.285

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  51 in total

Review 1.  Epigenetic memories: structural marks or active circuits?

Authors:  Floriane Nicol-Benoît; Pascale Le-Goff; Yves Le-Dréan; Florence Demay; Farzad Pakdel; Gilles Flouriot; Denis Michel
Journal:  Cell Mol Life Sci       Date:  2012-02-14       Impact factor: 9.261

2.  The sensitivity of memory consolidation and reconsolidation to inhibitors of protein synthesis and kinases: computational analysis.

Authors:  Yili Zhang; Paul Smolen; Douglas A Baxter; John H Byrne
Journal:  Learn Mem       Date:  2010-08-24       Impact factor: 2.460

Review 3.  Building synthetic memory.

Authors:  Mara C Inniss; Pamela A Silver
Journal:  Curr Biol       Date:  2013-09-09       Impact factor: 10.834

Review 4.  Foundations for the design and implementation of synthetic genetic circuits.

Authors:  Adrian L Slusarczyk; Allen Lin; Ron Weiss
Journal:  Nat Rev Genet       Date:  2012-05-18       Impact factor: 53.242

5.  Rewritable digital data storage in live cells via engineered control of recombination directionality.

Authors:  Jerome Bonnet; Pakpoom Subsoontorn; Drew Endy
Journal:  Proc Natl Acad Sci U S A       Date:  2012-05-21       Impact factor: 11.205

6.  Robust spindle alignment in Drosophila neuroblasts by ultrasensitive activation of pins.

Authors:  Nicholas R Smith; Kenneth E Prehoda
Journal:  Mol Cell       Date:  2011-08-19       Impact factor: 17.970

7.  Synthetic circuit identifies subpopulations with sustained memory of DNA damage.

Authors:  Devin R Burrill; Pamela A Silver
Journal:  Genes Dev       Date:  2011-03-01       Impact factor: 11.361

Review 8.  Memory Takes Time.

Authors:  Nikolay Vadimovich Kukushkin; Thomas James Carew
Journal:  Neuron       Date:  2017-07-19       Impact factor: 17.173

9.  Bottom-up approaches in synthetic biology and biomaterials for tissue engineering applications.

Authors:  Mitchell S Weisenberger; Tara L Deans
Journal:  J Ind Microbiol Biotechnol       Date:  2018-03-19       Impact factor: 3.346

10.  BiP availability distinguishes states of homeostasis and stress in the endoplasmic reticulum of living cells.

Authors:  Chun Wei Lai; Deborah E Aronson; Erik Lee Snapp
Journal:  Mol Biol Cell       Date:  2010-04-21       Impact factor: 4.138

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