Literature DB >> 24028965

Building synthetic memory.

Mara C Inniss1, Pamela A Silver.   

Abstract

Cellular memory - conversion of a transient signal into a sustained response - is a common feature of biological systems. Synthetic biologists aim to understand and re-engineer such systems in a reliable and predictable manner. Synthetic memory circuits have been designed and built in vitro and in vivo based on diverse mechanisms, such as oligonucleotide hybridization, recombination, transcription, phosphorylation, and RNA editing. Thus far, building these circuits has helped us explore the basic principles required for stable memory and ask novel biological questions. Here we discuss strategies for building synthetic memory circuits, their use as research tools, and future applications of these devices in medicine and industry.
Copyright © 2013 Elsevier Ltd. All rights reserved.

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Year:  2013        PMID: 24028965      PMCID: PMC3821973          DOI: 10.1016/j.cub.2013.06.047

Source DB:  PubMed          Journal:  Curr Biol        ISSN: 0960-9822            Impact factor:   10.834


  48 in total

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Journal:  Genesis       Date:  2000-02       Impact factor: 2.487

2.  Positive feedback in eukaryotic gene networks: cell differentiation by graded to binary response conversion.

Authors:  A Becskei; B Séraphin; L Serrano
Journal:  EMBO J       Date:  2001-05-15       Impact factor: 11.598

3.  Neural network computation with DNA strand displacement cascades.

Authors:  Lulu Qian; Erik Winfree; Jehoshua Bruck
Journal:  Nature       Date:  2011-07-20       Impact factor: 49.962

4.  Bottom-up construction of in vitro switchable memories.

Authors:  Adrien Padirac; Teruo Fujii; Yannick Rondelez
Journal:  Proc Natl Acad Sci U S A       Date:  2012-10-29       Impact factor: 11.205

Review 5.  Synthetic biology advancing clinical applications.

Authors:  Marc Folcher; Martin Fussenegger
Journal:  Curr Opin Chem Biol       Date:  2012-07-21       Impact factor: 8.822

6.  A system for detection of genetic and epigenetic alterations in Escherichia coli induced by DNA-damaging agents.

Authors:  Z Toman; C Dambly-Chaudière; L Tenenbaum; M Radman
Journal:  J Mol Biol       Date:  1985-11-05       Impact factor: 5.469

7.  Programming cells by multiplex genome engineering and accelerated evolution.

Authors:  Harris H Wang; Farren J Isaacs; Peter A Carr; Zachary Z Sun; George Xu; Craig R Forest; George M Church
Journal:  Nature       Date:  2009-07-26       Impact factor: 49.962

8.  An engineered epigenetic transgene switch in mammalian cells.

Authors:  Beat P Kramer; Alessandro Usseglio Viretta; Marie Daoud-El-Baba; Dominique Aubel; Wilfried Weber; Martin Fussenegger
Journal:  Nat Biotechnol       Date:  2004-06-06       Impact factor: 54.908

9.  Construction of an in vitro bistable circuit from synthetic transcriptional switches.

Authors:  Jongmin Kim; Kristin S White; Erik Winfree
Journal:  Mol Syst Biol       Date:  2006-12-12       Impact factor: 11.429

Review 10.  Emerging biomedical applications of synthetic biology.

Authors:  Wilfried Weber; Martin Fussenegger
Journal:  Nat Rev Genet       Date:  2011-11-29       Impact factor: 53.242

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  18 in total

1.  Synthetic biology. Genomically encoded analog memory with precise in vivo DNA writing in living cell populations.

Authors:  Fahim Farzadfard; Timothy K Lu
Journal:  Science       Date:  2014-11-14       Impact factor: 47.728

2.  A biological perspective on memory.

Authors:  Jonathon D Crystal; David L Glanzman
Journal:  Curr Biol       Date:  2013-09-09       Impact factor: 10.834

3.  Synthetic associative learning in engineered multicellular consortia.

Authors:  Javier Macia; Blai Vidiella; Ricard V Solé
Journal:  J R Soc Interface       Date:  2017-04       Impact factor: 4.118

4.  Engineering dynamical control of cell fate switching using synthetic phospho-regulons.

Authors:  Russell M Gordley; Reid E Williams; Caleb J Bashor; Jared E Toettcher; Shude Yan; Wendell A Lim
Journal:  Proc Natl Acad Sci U S A       Date:  2016-11-07       Impact factor: 11.205

Review 5.  Synthetic analog and digital circuits for cellular computation and memory.

Authors:  Oliver Purcell; Timothy K Lu
Journal:  Curr Opin Biotechnol       Date:  2014-05-08       Impact factor: 9.740

6.  Bottom-up approaches in synthetic biology and biomaterials for tissue engineering applications.

Authors:  Mitchell S Weisenberger; Tara L Deans
Journal:  J Ind Microbiol Biotechnol       Date:  2018-03-19       Impact factor: 3.346

Review 7.  Biomolecular Assemblies: Moving from Observation to Predictive Design.

Authors:  Corey J Wilson; Andreas S Bommarius; Julie A Champion; Yury O Chernoff; David G Lynn; Anant K Paravastu; Chen Liang; Ming-Chien Hsieh; Jennifer M Heemstra
Journal:  Chem Rev       Date:  2018-10-03       Impact factor: 60.622

8.  Survival of Phenotypic Information during Cellular Growth Transitions.

Authors:  J Christian J Ray
Journal:  ACS Synth Biol       Date:  2016-03-07       Impact factor: 5.110

9.  Rewritable multi-event analog recording in bacterial and mammalian cells.

Authors:  Weixin Tang; David R Liu
Journal:  Science       Date:  2018-02-15       Impact factor: 47.728

10.  Computational implementation of a tunable multicellular memory circuit for engineered eukaryotic consortia.

Authors:  Josep Sardanyés; Adriano Bonforti; Nuria Conde; Ricard Solé; Javier Macia
Journal:  Front Physiol       Date:  2015-10-09       Impact factor: 4.566

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