Literature DB >> 29523937

Dynamic Water Hydrogen-Bond Networks at the Interface of a Lipid Membrane Containing Palmitoyl-Oleoyl Phosphatidylglycerol.

Konstantina Karathanou1, Ana-Nicoleta Bondar2.   

Abstract

Lipid membrane interfaces are complex environments that host essential cellular processes such as binding of proteins or drug molecules. A key open question is how water molecules at the interface of membranes with anionic lipids participate in protein binding. To address this question, we studied the dynamics of water hydrogen bonding at the interface of membranes composed of phosphatidylcholine and phosphatidylglycerol, and implemented an algorithm to identify hydrogen-bonded networks at the interface of a lipid membrane, and to characterize their dynamics and linear connections. We find that the membrane interface is characterized by a rich network of hydrogen-bonded water chains that bridge lipid headgroups, some of which form transient lipid clusters. Water-mediated bridges between with lipid phosphate groups are dynamic, with residence lifetimes on the order of picoseconds. These clusters of water/lipid headgroup hydrogen bonds could provide a platform for the binding of proteins or of drug molecules with cationic groups.

Entities:  

Keywords:  Anionic lipid membranes; Dynamic hydrogen-bond networks; Water–lipid interactions

Mesh:

Substances:

Year:  2018        PMID: 29523937     DOI: 10.1007/s00232-018-0023-1

Source DB:  PubMed          Journal:  J Membr Biol        ISSN: 0022-2631            Impact factor:   1.843


  47 in total

1.  An extended dynamical hydration shell around proteins.

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Journal:  Proc Natl Acad Sci U S A       Date:  2007-12-19       Impact factor: 11.205

2.  CHARMM-GUI: a web-based graphical user interface for CHARMM.

Authors:  Sunhwan Jo; Taehoon Kim; Vidyashankara G Iyer; Wonpil Im
Journal:  J Comput Chem       Date:  2008-08       Impact factor: 3.376

3.  Hydration dynamics in a partially denatured ensemble of the globular protein human alpha-lactalbumin investigated with molecular dynamics simulations.

Authors:  Neelanjana Sengupta; Simon Jaud; Douglas J Tobias
Journal:  Biophys J       Date:  2008-09-05       Impact factor: 4.033

4.  Dielectric relaxation dynamics of water in model membranes probed by terahertz spectroscopy.

Authors:  K J Tielrooij; D Paparo; L Piatkowski; H J Bakker; M Bonn
Journal:  Biophys J       Date:  2009-11-04       Impact factor: 4.033

Review 5.  Surface exposure of phosphatidylserine in pathological cells.

Authors:  R F A Zwaal; P Comfurius; E M Bevers
Journal:  Cell Mol Life Sci       Date:  2005-05       Impact factor: 9.261

6.  CHARMM-GUI Membrane Builder toward realistic biological membrane simulations.

Authors:  Emilia L Wu; Xi Cheng; Sunhwan Jo; Huan Rui; Kevin C Song; Eder M Dávila-Contreras; Yifei Qi; Jumin Lee; Viviana Monje-Galvan; Richard M Venable; Jeffery B Klauda; Wonpil Im
Journal:  J Comput Chem       Date:  2014-08-07       Impact factor: 3.376

Review 7.  Hydrogen bond dynamics in membrane protein function.

Authors:  Ana-Nicoleta Bondar; Stephen H White
Journal:  Biochim Biophys Acta       Date:  2011-12-08

8.  Water hydrogen-bond dynamics around amino acids: the key role of hydrophilic hydrogen-bond acceptor groups.

Authors:  Fabio Sterpone; Guillaume Stirnemann; James T Hynes; Damien Laage
Journal:  J Phys Chem B       Date:  2010-02-11       Impact factor: 2.991

9.  Molecular dynamics simulation of a palmitoyl-oleoyl phosphatidylserine bilayer with Na+ counterions and NaCl.

Authors:  Parag Mukhopadhyay; Luca Monticelli; D Peter Tieleman
Journal:  Biophys J       Date:  2004-03       Impact factor: 4.033

10.  In search of a novel target - phosphatidylserine exposed by non-apoptotic tumor cells and metastases of malignancies with poor treatment efficacy.

Authors:  Sabrina Riedl; Beate Rinner; Martin Asslaber; Helmut Schaider; Sonja Walzer; Alexandra Novak; Karl Lohner; Dagmar Zweytick
Journal:  Biochim Biophys Acta       Date:  2011-07-26
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  6 in total

1.  Lipid Membranes and Reactions at Lipid Interfaces: Theory, Experiments, and Applications.

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Journal:  J Membr Biol       Date:  2018-06-29       Impact factor: 1.843

2.  Physiological Calcium Concentrations Slow Dynamics at the Lipid-Water Interface.

Authors:  Mason L Valentine; Alfredo E Cardenas; Ron Elber; Carlos R Baiz
Journal:  Biophys J       Date:  2018-09-06       Impact factor: 4.033

Review 3.  Understanding Conformational Dynamics of Complex Lipid Mixtures Relevant to Biology.

Authors:  Ran Friedman; Syma Khalid; Camilo Aponte-Santamaría; Elena Arutyunova; Marlon Becker; Kevin J Boyd; Mikkel Christensen; João T S Coimbra; Simona Concilio; Csaba Daday; Floris J van Eerden; Pedro A Fernandes; Frauke Gräter; Davit Hakobyan; Andreas Heuer; Konstantina Karathanou; Fabian Keller; M Joanne Lemieux; Siewert J Marrink; Eric R May; Antara Mazumdar; Richard Naftalin; Mónica Pickholz; Stefano Piotto; Peter Pohl; Peter Quinn; Maria J Ramos; Birgit Schiøtt; Durba Sengupta; Lucia Sessa; Stefano Vanni; Talia Zeppelin; Valeria Zoni; Ana-Nicoleta Bondar; Carmen Domene
Journal:  J Membr Biol       Date:  2018-10-22       Impact factor: 1.843

4.  Examining the Effect of Charged Lipids on Mitochondrial Outer Membrane Dynamics Using Atomistic Simulations.

Authors:  Aline A Oliveira; Tomasz Róg; Albérico B F da Silva; Rommie E Amaro; Mark S Johnson; Pekka A Postila
Journal:  Biomolecules       Date:  2022-01-22

5.  Translocation of silica nanospheres through giant unilamellar vesicles (GUVs) induced by a high frequency electromagnetic field.

Authors:  Palalle G Tharushi Perera; Nevena Todorova; Zoltan Vilagosh; Olha Bazaka; The Hong Phong Nguyen; Kateryna Bazaka; Russell J Crawford; Rodney J Croft; Irene Yarovsky; Elena P Ivanova
Journal:  RSC Adv       Date:  2021-09-23       Impact factor: 4.036

6.  Integrating In Vitro and In Silico Analysis of a Cationic Antimicrobial Peptide Interaction with Model Membranes of Colistin-Resistant Pseudomonas aeruginosa Strains.

Authors:  Sandra Patricia Rivera-Sanchez; Iván Darío Ocampo-Ibáñez; Yamil Liscano; Natalia Martínez; Isamar Muñoz; Marcela Manrique-Moreno; Luis Martinez-Martinez; José Oñate-Garzon
Journal:  Pharmaceutics       Date:  2022-06-12       Impact factor: 6.525

  6 in total

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