Literature DB >> 20082674

Translational systems biology of inflammation and healing.

Yoram Vodovotz1.   

Abstract

Personalized medicine is a major goal for the future of healthcare, and we suggest that computational simulations are necessary in order to achieve it. Inflammatory diseases, both acute and chronic, represent an area in which personalized medicine is especially needed, given the high level of individual variability that characterizes these diseases. We have created such simulations, and have used them to gain basic insights into the inflammatory response under baseline, gene-knockout, and drug-treated experimental animals; for in silico experiments and clinical trials in sepsis, trauma, and wound healing; and to create patient-specific simulations in polytrauma, traumatic brain injury, and vocal fold inflammation. Since they include both circulating and tissue-level inflammatory mediators, these simulations transcend typical cytokine networks by associating inflammatory processes with tissue/organ damage via tissue damage/dysfunction. We suggest that computational simulations are the cornerstone of Translational Systems Biology approaches for inflammatory diseases.

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Year:  2010        PMID: 20082674      PMCID: PMC3640322          DOI: 10.1111/j.1524-475X.2009.00566.x

Source DB:  PubMed          Journal:  Wound Repair Regen        ISSN: 1067-1927            Impact factor:   3.617


  37 in total

1.  Mathematical modelling of nitric oxide activity in wound healing can explain keloid and hypertrophic scarring.

Authors:  C A Cobbold; J A Sherratt
Journal:  J Theor Biol       Date:  2000-05-21       Impact factor: 2.691

Review 2.  A new approach to decoding life: systems biology.

Authors:  T Ideker; T Galitski; L Hood
Journal:  Annu Rev Genomics Hum Genet       Date:  2001       Impact factor: 8.929

3.  The acute inflammatory response in diverse shock states.

Authors:  Carson C Chow; Gilles Clermont; Rukmini Kumar; Claudio Lagoa; Zacharia Tawadrous; David Gallo; Binnie Betten; John Bartels; Gregory Constantine; Mitchell P Fink; Timothy R Billiar; Yoram Vodovotz
Journal:  Shock       Date:  2005-07       Impact factor: 3.454

4.  In silico and in vivo approach to elucidate the inflammatory complexity of CD14-deficient mice.

Authors:  Jose M Prince; Ryan M Levy; John Bartels; Arie Baratt; John M Kane; Claudio Lagoa; Jonathan Rubin; Judy Day; Joyce Wei; Mitchell P Fink; Sanna M Goyert; Gilles Clermont; Timothy R Billiar; Yoram Vodovotz
Journal:  Mol Med       Date:  2006 Apr-Jun       Impact factor: 6.354

Review 5.  Search for organising principles: understanding in systems biology.

Authors:  M D Mesarovic; S N Sreenath; J D Keene
Journal:  Syst Biol (Stevenage)       Date:  2004-06

Review 6.  In silico models of acute inflammation in animals.

Authors:  Yoram Vodovotz; Carson C Chow; John Bartels; Claudio Lagoa; Jose M Prince; Ryan M Levy; Rukmini Kumar; Judy Day; Jonathan Rubin; Greg Constantine; Timothy R Billiar; Mitchell P Fink; Gilles Clermont
Journal:  Shock       Date:  2006-09       Impact factor: 3.454

Review 7.  The diabetic neuropathic ulcer: an overview.

Authors:  A C Browne; R G Sibbald
Journal:  Ostomy Wound Manage       Date:  1999-01       Impact factor: 2.629

Review 8.  Diabetic foot ulcers: A framework for prevention and care.

Authors:  A J Boulton; P Meneses; W J Ennis
Journal:  Wound Repair Regen       Date:  1999 Jan-Feb       Impact factor: 3.617

Review 9.  Cytokines and peripheral nerve disorders.

Authors:  A Créange; G Barlovatz-Meimon; R K Gherardi
Journal:  Eur Cytokine Netw       Date:  1997-06       Impact factor: 2.737

Review 10.  The cytokine response to strenuous exercise.

Authors:  B K Pedersen; K Ostrowski; T Rohde; H Bruunsgaard
Journal:  Can J Physiol Pharmacol       Date:  1998-05       Impact factor: 2.273

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  22 in total

1.  A Biohybrid Device for the Systemic Control of Acute Inflammation.

Authors:  Rami A Namas; Maxim Mikheev; Jinling Yin; Patrick Over; Matthew Young; Gregory M Constantine; Ruben Zamora; Jörg Gerlach; Yoram Vodovotz
Journal:  Disrupt Sci Technol       Date:  2012-05-14

Review 2.  From data patterns to mechanistic models in acute critical illness.

Authors:  Jean-Marie Aerts; Wassim M Haddad; Gary An; Yoram Vodovotz
Journal:  J Crit Care       Date:  2014-03-29       Impact factor: 3.425

3.  Modeling autonomic regulation of cardiac function and heart rate variability in human endotoxemia.

Authors:  Jeremy D Scheff; Panteleimon D Mavroudis; Steven E Calvano; Stephen F Lowry; Ioannis P Androulakis
Journal:  Physiol Genomics       Date:  2011-06-14       Impact factor: 3.107

4.  A three-dimensional mathematical and computational model of necrotizing enterocolitis.

Authors:  Jared Barber; Mark Tronzo; C Harold Horvat; Gilles Clermont; Jeffrey Upperman; Yoram Vodovotz; Ivan Yotov
Journal:  J Theor Biol       Date:  2012-12-07       Impact factor: 2.691

5.  Computational Modeling of Inflammation and Wound Healing.

Authors:  Cordelia Ziraldo; Qi Mi; Gary An; Yoram Vodovotz
Journal:  Adv Wound Care (New Rochelle)       Date:  2013-11       Impact factor: 4.730

6.  Data driven linear algebraic methods for analysis of molecular pathways: application to disease progression in shock/trauma.

Authors:  Mary F McGuire; M Sriram Iyengar; David W Mercer
Journal:  J Biomed Inform       Date:  2011-12-17       Impact factor: 6.317

Review 7.  Sepsis: from pattern to mechanism and back.

Authors:  Gary An; Rami A Namas; Yoram Vodovotz
Journal:  Crit Rev Biomed Eng       Date:  2012

Review 8.  Systems-based approaches toward wound healing.

Authors:  Adrian Buganza Tepole; Ellen Kuhl
Journal:  Pediatr Res       Date:  2013-01-11       Impact factor: 3.756

9.  Intravenous N-acetylcysteine in pediatric patients with nonacetaminophen acute liver failure: a placebo-controlled clinical trial.

Authors:  Robert H Squires; Anil Dhawan; Estella Alonso; Michael R Narkewicz; Benjamin L Shneider; Norberto Rodriguez-Baez; Dominic Dell Olio; Saul Karpen; John Bucuvalas; Steven Lobritto; Elizabeth Rand; Philip Rosenthal; Simon Horslen; Vicky Ng; Girish Subbarao; Nanda Kerkar; David Rudnick; M James Lopez; Kathleen Schwarz; Rene Romero; Scott Elisofon; Edward Doo; Patricia R Robuck; Sharon Lawlor; Steven H Belle
Journal:  Hepatology       Date:  2013-02-04       Impact factor: 17.425

Review 10.  In silico modeling: methods and applications to trauma and sepsis.

Authors:  Yoram Vodovotz; Timothy R Billiar
Journal:  Crit Care Med       Date:  2013-08       Impact factor: 7.598

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