Literature DB >> 20057075

Cloning, expression, purification, crystallization and preliminary crystallographic studies of UgdG, an UDP-glucose dehydrogenase from Sphingomonas elodea ATCC 31461.

Joana Rocha1, Ana Teresa Granja, Isabel Sá-Correia, Arsénio Fialho, Carlos Frazão.   

Abstract

Gellan gum, a commercial gelling agent produced by Sphingomonas elodea ATCC 31461, is a high-value microbial exopolysaccharide. UDP-glucose dehydrogenase (UGD; EC 1.1.1.22) is responsible for the NAD-dependent twofold oxidation of UDP-glucose to UDP-glucuronic acid, one of the key components for gellan biosynthesis. S. elodea ATCC 31461 UGD, termed UgdG, was cloned, expressed, purified and crystallized in native and SeMet-derivatized forms in hexagonal and tetragonal space groups, respectively; the crystals diffracted X-rays to 2.40 and 3.40 A resolution, respectively. Experimental phases were obtained for the tetragonal SeMet-derivatized crystal form by a single-wavelength anomalous dispersion experiment. This structure was successfully used as a molecular-replacement probe for the hexagonal crystal form of the native protein.

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Year:  2009        PMID: 20057075      PMCID: PMC2805541          DOI: 10.1107/S174430910904929X

Source DB:  PubMed          Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun        ISSN: 1744-3091


  19 in total

1.  Miscellaneous algorithms for density modification.

Authors:  K Cowtan; P Main
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  1998-07-01

2.  Modified phased translation functions and their application to molecular-fragment location.

Authors:  K Cowtan
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  1998-09-01

3.  Expression, inducer spectrum, domain structure, and function of MopR, the regulator of phenol degradation in Acinetobacter calcoaceticus NCIB8250.

Authors:  F Schirmer; S Ehrt; W Hillen
Journal:  J Bacteriol       Date:  1997-02       Impact factor: 3.490

4.  Proteins encoded by Sphingomonas elodea ATCC 31461 rmlA and ugpG genes, involved in gellan gum biosynthesis, exhibit both dTDP- and UDP-glucose pyrophosphorylase activities.

Authors:  Elisabete Silva; Ana Rita Marques; Arsénio Mendes Fialho; Ana Teresa Granja; Isabel Sá-Correia
Journal:  Appl Environ Microbiol       Date:  2005-08       Impact factor: 4.792

5.  Solvent content of protein crystals.

Authors:  B W Matthews
Journal:  J Mol Biol       Date:  1968-04-28       Impact factor: 5.469

6.  The first structure of UDP-glucose dehydrogenase reveals the catalytic residues necessary for the two-fold oxidation.

Authors:  R E Campbell; S C Mosimann; I van De Rijn; M E Tanner; N C Strynadka
Journal:  Biochemistry       Date:  2000-06-13       Impact factor: 3.162

7.  Organization of genes required for gellan polysaccharide biosynthesis in Sphingomonas elodea ATCC 31461.

Authors:  Nancy E Harding; Yamini N Patel; Russell J Coleman
Journal:  J Ind Microbiol Biotechnol       Date:  2004-02-06       Impact factor: 3.346

8.  Biochemical characterization and phylogenetic analysis of UDP-glucose dehydrogenase from the gellan gum producer Sphingomonas elodea ATCC 31461.

Authors:  Ana Teresa Granja; Alma Popescu; Ana Rita Marques; Isabel Sá-Correia; Arsenio M Fialho
Journal:  Appl Microbiol Biotechnol       Date:  2007-08-01       Impact factor: 4.813

Review 9.  Scaling and assessment of data quality.

Authors:  Philip Evans
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2005-12-14

10.  Phaser crystallographic software.

Authors:  Airlie J McCoy; Ralf W Grosse-Kunstleve; Paul D Adams; Martyn D Winn; Laurent C Storoni; Randy J Read
Journal:  J Appl Crystallogr       Date:  2007-07-13       Impact factor: 3.304

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  6 in total

1.  Cloning, expression, purification, crystallization and preliminary crystallographic studies of BceC, a UDP-glucose dehydrogenase from Burkholderia cepacia IST408.

Authors:  Joana Rocha; Alma O Popescu; Isabel Sá-Correia; Arsénio M Fialho; Carlos Frazão
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2010-02-24

2.  Structure of Burkholderia cepacia UDP-glucose dehydrogenase (UGD) BceC and role of Tyr10 in final hydrolysis of UGD thioester intermediate.

Authors:  Joana Rocha; Alma O Popescu; Patrícia Borges; Dalila Mil-Homens; Leonilde M Moreira; Isabel Sá-Correia; Arsénio M Fialho; Carlos Frazão
Journal:  J Bacteriol       Date:  2011-05-20       Impact factor: 3.490

3.  Structural Characterization of CalS8, a TDP-α-D-Glucose Dehydrogenase Involved in Calicheamicin Aminodideoxypentose Biosynthesis.

Authors:  Shanteri Singh; Karolina Michalska; Lance Bigelow; Michael Endres; Madan K Kharel; Gyorgy Babnigg; Ragothaman M Yennamalli; Craig A Bingman; Andrzej Joachimiak; Jon S Thorson; George N Phillips
Journal:  J Biol Chem       Date:  2015-08-03       Impact factor: 5.157

Review 4.  Cell-based high-throughput screening of polysaccharide biosynthesis hosts.

Authors:  Zi-Xu Liu; Si-Ling Huang; Jin Hou; Xue-Ping Guo; Feng-Shan Wang; Ju-Zheng Sheng
Journal:  Microb Cell Fact       Date:  2021-03-05       Impact factor: 5.328

5.  Plasmids of carotenoid-producing Paracoccus spp. (Alphaproteobacteria) - structure, diversity and evolution.

Authors:  Anna Maj; Lukasz Dziewit; Jakub Czarnecki; Miroslawa Wlodarczyk; Jadwiga Baj; Grazyna Skrzypczyk; Dorota Giersz; Dariusz Bartosik
Journal:  PLoS One       Date:  2013-11-08       Impact factor: 3.240

6.  In Silico Characterization and Phylogenetic Distribution of Extracellular Matrix Components in the Model Rhizobacteria Pseudomonas fluorescens F113 and Other Pseudomonads.

Authors:  Esther Blanco-Romero; Daniel Garrido-Sanz; Rafael Rivilla; Miguel Redondo-Nieto; Marta Martín
Journal:  Microorganisms       Date:  2020-11-06
  6 in total

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