Literature DB >> 10841783

The first structure of UDP-glucose dehydrogenase reveals the catalytic residues necessary for the two-fold oxidation.

R E Campbell1, S C Mosimann, I van De Rijn, M E Tanner, N C Strynadka.   

Abstract

Bacterial UDP-glucose dehydrogenase (UDPGlcDH) is essential for formation of the antiphagocytic capsule that protects many virulent bacteria such as Streptococcus pyogenes andStreptococcus pneumoniae type 3 from the host's immune system. We have determined the X-ray structures of both native and Cys260Ser UDPGlcDH from S. pyogenes (74% similarity to S. pneumoniae) in ternary complexes with UDP-xylose/NAD(+) and UDP-glucuronic acid/NAD(H), respectively. The 402 residue homodimeric UDPGlcDH is composed of an N-terminal NAD(+) dinucleotide binding domain and a C-terminal UDP-sugar binding domain connected by a long (48 A) central alpha-helix. The first 290 residues of UDPGlcDH share structural homology with 6-phosphogluconate dehydrogenase, including conservation of an active site lysine and asparagine that are implicated in the enzyme mechanism. Also proposed to participate in the catalytic mechanism are a threonine and a glutamate that hydrogen bond to a conserved active site water molecule suitably positioned for general acid/base catalysis.

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Year:  2000        PMID: 10841783

Source DB:  PubMed          Journal:  Biochemistry        ISSN: 0006-2960            Impact factor:   3.162


  38 in total

1.  Purification, crystallization and preliminary X-ray diffraction studies of a putative UDP-N-acetyl-D-mannosamine dehydrogenase from Pyrococcus horikoshii OT3.

Authors:  Neratur K Lokanath; Kudigana J Pampa; Toshimi Kamiya; Naoki Kunishima
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2007-04-14

2.  Interception of teicoplanin oxidation intermediates yields new antimicrobial scaffolds.

Authors:  Yu-Chen Liu; Yi-Shan Li; Syue-Yi Lyu; Li-Jen Hsu; Yu-Hou Chen; Yu-Ting Huang; Hsiu-Chien Chan; Chuen-Jiuan Huang; Gan-Hong Chen; Chia-Cheng Chou; Ming-Daw Tsai; Tsung-Lin Li
Journal:  Nat Chem Biol       Date:  2011-04-10       Impact factor: 15.040

3.  Cloning, expression, purification, crystallization and preliminary crystallographic studies of BceC, a UDP-glucose dehydrogenase from Burkholderia cepacia IST408.

Authors:  Joana Rocha; Alma O Popescu; Isabel Sá-Correia; Arsénio M Fialho; Carlos Frazão
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2010-02-24

Review 4.  Reconstruction of an in vitro niche for the transition from intervertebral disc development to nucleus pulposus regeneration.

Authors:  Mark Shoukry; Jingting Li; Ming Pei
Journal:  Stem Cells Dev       Date:  2013-02-15       Impact factor: 3.272

5.  UDP-glucose dehydrogenase polymorphisms from patients with congenital heart valve defects disrupt enzyme stability and quaternary assembly.

Authors:  Annastasia S Hyde; Erin L Farmer; Katherine E Easley; Kristy van Lammeren; Vincent M Christoffels; Joseph J Barycki; Jeroen Bakkers; Melanie A Simpson
Journal:  J Biol Chem       Date:  2012-07-18       Impact factor: 5.157

6.  Hysteresis and Allostery in Human UDP-Glucose Dehydrogenase Require a Flexible Protein Core.

Authors:  Nathaniel R Beattie; Brittany J Pioso; Andrew M Sidlo; Nicholas D Keul; Zachary A Wood
Journal:  Biochemistry       Date:  2018-11-30       Impact factor: 3.162

7.  Inhibiting Hexamer Disassembly of Human UDP-Glucose Dehydrogenase by Photoactivated Amino Acid Cross-Linking.

Authors:  George Grady; Ashley Thelen; Jaleen Albers; Tong Ju; Jiantao Guo; Joseph J Barycki; Melanie A Simpson
Journal:  Biochemistry       Date:  2016-05-27       Impact factor: 3.162

8.  Cloning, expression, purification, crystallization and preliminary crystallographic studies of UgdG, an UDP-glucose dehydrogenase from Sphingomonas elodea ATCC 31461.

Authors:  Joana Rocha; Ana Teresa Granja; Isabel Sá-Correia; Arsénio Fialho; Carlos Frazão
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2009-12-25

Review 9.  Natural-product sugar biosynthesis and enzymatic glycodiversification.

Authors:  Christopher J Thibodeaux; Charles E Melançon; Hung-wen Liu
Journal:  Angew Chem Int Ed Engl       Date:  2008       Impact factor: 15.336

10.  Molecular modeling of the reductase domain to elucidate the reaction mechanism of reduction of peptidyl thioester into its corresponding alcohol in non-ribosomal peptide synthetases.

Authors:  Balachandran Manavalan; Senthil K Murugapiran; Gwang Lee; Sangdun Choi
Journal:  BMC Struct Biol       Date:  2010-01-12
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