Literature DB >> 20054127

Crystallization of selenomethionyl exo-beta-1,3-galactanase from the basidiomycete Phanerochaete chrysosporium.

Takuya Ishida1, Zui Fujimoto, Hitomi Ichinose, Kiyohiko Igarashi, Satoshi Kaneko, Masahiro Samejima.   

Abstract

Exo-beta-1,3-galactanase from Phanerochaete chrysosporium (Pc1,3Gal43A) consists of a glycoside hydrolase family 43 catalytic domain and a substrate-binding domain that belongs to carbohydrate-binding module family 35. It catalyzes the hydrolysis of beta-1,3-galactan, which is the backbone of the arabinogalactan proteins; the C-terminal carbohydrate-binding module family 35 domain increases the local concentration of the enzyme around beta-1,3-galactan by its high affinity for the substrate. To enable phase determination using the multiwavelength anomalous dispersion method, selenomethionyl Pc1,3Gal43A was crystallized at 298 K using the hanging-drop vapour-diffusion method. The presence of selenium in the crystals was confirmed from the X-ray absorption spectrum. The crystals belonged to space group P2(1) and diffracted to 1.8 A resolution.

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Year:  2009        PMID: 20054127      PMCID: PMC2802879          DOI: 10.1107/S1744309109043395

Source DB:  PubMed          Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun        ISSN: 1744-3091


  13 in total

1.  Crystallization and preliminary X-ray analysis of an arabinoxylan arabinofuranohydrolase from Bacillus subtilis.

Authors:  Elien Vandermarliere; Tine M Bourgois; Steven Van Campenhout; Sergei V Strelkov; Guido Volckaert; Jan A Delcour; Christophe M Courtin; Anja Rabijns
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2007-07-21

Review 2.  The biology of arabinogalactan proteins.

Authors:  Georg J Seifert; Keith Roberts
Journal:  Annu Rev Plant Biol       Date:  2007       Impact factor: 26.379

3.  Preparation and crystallization of selenomethionyl dextranase from Penicillium minioluteum expressed in Pichia pastoris.

Authors:  Anna M Larsson; Jerry Ståhlberg; T Alwyn Jones
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2002-01-24

4.  Solvent content of protein crystals.

Authors:  B W Matthews
Journal:  J Mol Biol       Date:  1968-04-28       Impact factor: 5.469

5.  The complex structures of arabinogalactan-proteins and the journey towards understanding function.

Authors:  Y Gaspar; K L Johnson; J A McKenna; A Bacic; C J Schultz
Journal:  Plant Mol Biol       Date:  2001-09       Impact factor: 4.076

6.  An exo-beta-1,3-galactanase having a novel beta-1,3-galactan-binding module from Phanerochaete chrysosporium.

Authors:  Hitomi Ichinose; Makoto Yoshida; Toshihisa Kotake; Atsushi Kuno; Kiyohiko Igarashi; Yoichi Tsumuraya; Masahiro Samejima; Jun Hirabayashi; Hideyuki Kobayashi; Satoshi Kaneko
Journal:  J Biol Chem       Date:  2005-05-02       Impact factor: 5.157

7.  Crystallization and preliminary crystallographic analysis of beta-L-arabinopyranosidase from Streptomyces avermitilis NBRC14893.

Authors:  Zui Fujimoto; Hitomi Ichinose; Koichi Harazono; Mariko Honda; Atsuko Uzura; Satoshi Kaneko
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2009-05-23

8.  Chemical and physical properties of an arabinogalactan-peptide from wheat endosperm.

Authors:  G B Fincher; W H Sawyer; B A Stone
Journal:  Biochem J       Date:  1974-06       Impact factor: 3.857

9.  Cellvibrio japonicus alpha-L-arabinanase 43A has a novel five-blade beta-propeller fold.

Authors:  Didier Nurizzo; Johan P Turkenburg; Simon J Charnock; Shirley M Roberts; Eleanor J Dodson; Vincent A McKie; Edward J Taylor; Harry J Gilbert; Gideon J Davies
Journal:  Nat Struct Biol       Date:  2002-09

10.  The Carbohydrate-Active EnZymes database (CAZy): an expert resource for Glycogenomics.

Authors:  Brandi L Cantarel; Pedro M Coutinho; Corinne Rancurel; Thomas Bernard; Vincent Lombard; Bernard Henrissat
Journal:  Nucleic Acids Res       Date:  2008-10-05       Impact factor: 16.971

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  2 in total

Review 1.  Arabinogalactan proteins: focus on carbohydrate active enzymes.

Authors:  Eva Knoch; Adiphol Dilokpimol; Naomi Geshi
Journal:  Front Plant Sci       Date:  2014-06-11       Impact factor: 5.753

2.  Unique active-site and subsite features in the arabinogalactan-degrading GH43 exo-β-1,3-galactanase from Phanerochaete chrysosporium.

Authors:  Kaori Matsuyama; Naomi Kishine; Zui Fujimoto; Naoki Sunagawa; Toshihisa Kotake; Yoichi Tsumuraya; Masahiro Samejima; Kiyohiko Igarashi; Satoshi Kaneko
Journal:  J Biol Chem       Date:  2020-10-22       Impact factor: 5.157

  2 in total

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