Literature DB >> 19478450

Crystallization and preliminary crystallographic analysis of beta-L-arabinopyranosidase from Streptomyces avermitilis NBRC14893.

Zui Fujimoto1, Hitomi Ichinose, Koichi Harazono, Mariko Honda, Atsuko Uzura, Satoshi Kaneko.   

Abstract

Beta-L-arabinopyranosidase from Streptomyces avermitilis NBRC14893 is a monomeric protein consisting of a catalytic domain belonging to glycosyl hydrolase family 27, an unknown domain and a substrate-binding domain belonging to carbohydrate-binding module family 13. The complete enzyme (residues 45-658) has successfully been cloned and homologously expressed in the Streptomyces expression system. beta-L-Arabinopyranosidase was crystallized by the sitting-drop vapour-diffusion method. The crystals diffracted to 1.6 A resolution and belonged to space group P2(1)2(1)2(1), with unit-cell parameters a = 68.2, b = 98.9, c = 181.3 A. The Matthews coefficient was calculated to be 2.38 A(3) Da(-1).

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Year:  2009        PMID: 19478450      PMCID: PMC2688429          DOI: 10.1107/S1744309109017230

Source DB:  PubMed          Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun        ISSN: 1744-3091


  18 in total

1.  Flash-cooling of macromolecular crystals in a capillary to overcome increased mosaicity.

Authors:  Min Yao; Yoshiaki Yasutake; Isao Tanaka
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2003-12-18

2.  Characterization of an exo-beta-1,3-D-galactanase from Streptomyces avermitilis NBRC14893 acting on arabinogalactan-proteins.

Authors:  Hitomi Ichinose; Toshihisa Kotake; Yoichi Tsumuraya; Satoshi Kaneko
Journal:  Biosci Biotechnol Biochem       Date:  2006-11-07       Impact factor: 2.043

Review 3.  The biology of arabinogalactan proteins.

Authors:  Georg J Seifert; Keith Roberts
Journal:  Annu Rev Plant Biol       Date:  2007       Impact factor: 26.379

4.  Crystal structures of the sugar complexes of Streptomyces olivaceoviridis E-86 xylanase: sugar binding structure of the family 13 carbohydrate binding module.

Authors:  Zui Fujimoto; Atsushi Kuno; Satoshi Kaneko; Hideyuki Kobayashi; Isao Kusakabe; Hiroshi Mizuno
Journal:  J Mol Biol       Date:  2002-02-08       Impact factor: 5.469

5.  The complex structures of arabinogalactan-proteins and the journey towards understanding function.

Authors:  Y Gaspar; K L Johnson; J A McKenna; A Bacic; C J Schultz
Journal:  Plant Mol Biol       Date:  2001-09       Impact factor: 4.076

6.  An exo-beta-1,3-galactanase having a novel beta-1,3-galactan-binding module from Phanerochaete chrysosporium.

Authors:  Hitomi Ichinose; Makoto Yoshida; Toshihisa Kotake; Atsushi Kuno; Kiyohiko Igarashi; Yoichi Tsumuraya; Masahiro Samejima; Jun Hirabayashi; Hideyuki Kobayashi; Satoshi Kaneko
Journal:  J Biol Chem       Date:  2005-05-02       Impact factor: 5.157

7.  A novel mechanism of xylan binding by a lectin-like module from Streptomyces lividans xylanase 10A.

Authors:  A B Boraston; P Tomme; E A Amandoron; D G Kilburn
Journal:  Biochem J       Date:  2000-09-15       Impact factor: 3.857

8.  Molecular cloning and expression in Escherichia coli of a Trichoderma viride endo-beta-(1-->6)-galactanase gene.

Authors:  Toshihisa Kotake; Satoshi Kaneko; Aya Kubomoto; Md Ashraful Haque; Hideyuki Kobayashi; Yoichi Tsumuraya
Journal:  Biochem J       Date:  2004-02-01       Impact factor: 3.857

9.  Rational affinity purification of native Streptomyces family 10 xylanase.

Authors:  Shigeyasu Ito; Atsushi Kuno; Ryuichiro Suzuki; Satoshi Kaneko; Yasuyuki Kawabata; Isao Kusakabe; Tsunemi Hasegawa
Journal:  J Biotechnol       Date:  2004-05-27       Impact factor: 3.307

10.  Crystal structure of rice alpha-galactosidase complexed with D-galactose.

Authors:  Zui Fujimoto; Satoshi Kaneko; Mitsuru Momma; Hideyuki Kobayashi; Hiroshi Mizuno
Journal:  J Biol Chem       Date:  2003-03-25       Impact factor: 5.157

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  5 in total

1.  Crystallization of selenomethionyl exo-beta-1,3-galactanase from the basidiomycete Phanerochaete chrysosporium.

Authors:  Takuya Ishida; Zui Fujimoto; Hitomi Ichinose; Kiyohiko Igarashi; Satoshi Kaneko; Masahiro Samejima
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2009-11-27

2.  A beta-l-Arabinopyranosidase from Streptomyces avermitilis is a novel member of glycoside hydrolase family 27.

Authors:  Hitomi Ichinose; Zui Fujimoto; Mariko Honda; Koichi Harazono; Yukifumi Nishimoto; Atsuko Uzura; Satoshi Kaneko
Journal:  J Biol Chem       Date:  2009-07-16       Impact factor: 5.157

3.  Characterization of an endo-processive-type xyloglucanase having a β-1,4-glucan-binding module and an endo-type xyloglucanase from Streptomyces avermitilis.

Authors:  Hitomi Ichinose; Yuko Araki; Mari Michikawa; Koichi Harazono; Katsuro Yaoi; Shuichi Karita; Satoshi Kaneko
Journal:  Appl Environ Microbiol       Date:  2012-08-31       Impact factor: 4.792

4.  A comparison of gas stream cooling and plunge cooling of macromolecular crystals.

Authors:  Kaitlin Harrison; Zhenguo Wu; Douglas H Juers
Journal:  J Appl Crystallogr       Date:  2019-08-23       Impact factor: 3.304

Review 5.  Arabinogalactan proteins: focus on carbohydrate active enzymes.

Authors:  Eva Knoch; Adiphol Dilokpimol; Naomi Geshi
Journal:  Front Plant Sci       Date:  2014-06-11       Impact factor: 5.753

  5 in total

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