Literature DB >> 20051986

The evolution of gene duplications: classifying and distinguishing between models.

Hideki Innan1, Fyodor Kondrashov.   

Abstract

Gene duplications and their subsequent divergence play an important part in the evolution of novel gene functions. Several models for the emergence, maintenance and evolution of gene copies have been proposed. However, a clear consensus on how gene duplications are fixed and maintained in genomes is lacking. Here, we present a comprehensive classification of the models that are relevant to all stages of the evolution of gene duplications. Each model predicts a unique combination of evolutionary dynamics and functional properties. Setting out these predictions is an important step towards identifying the main mechanisms that are involved in the evolution of gene duplications.

Mesh:

Year:  2010        PMID: 20051986     DOI: 10.1038/nrg2689

Source DB:  PubMed          Journal:  Nat Rev Genet        ISSN: 1471-0056            Impact factor:   53.242


  84 in total

1.  On the possibility of constructive neutral evolution.

Authors:  A Stoltzfus
Journal:  J Mol Evol       Date:  1999-08       Impact factor: 2.395

Review 2.  Preservation of duplicate genes by complementary, degenerative mutations.

Authors:  A Force; M Lynch; F B Pickett; A Amores; Y L Yan; J Postlethwait
Journal:  Genetics       Date:  1999-04       Impact factor: 4.562

3.  The altered evolutionary trajectories of gene duplicates.

Authors:  Michael Lynch; Vaishali Katju
Journal:  Trends Genet       Date:  2004-11       Impact factor: 11.639

4.  Divergence in expression between duplicated genes in Arabidopsis.

Authors:  Eric W Ganko; Blake C Meyers; Todd J Vision
Journal:  Mol Biol Evol       Date:  2007-08-01       Impact factor: 16.240

5.  Repression and loss of gene expression outpaces activation and gain in recently duplicated fly genes.

Authors:  Todd H Oakley; Bjørn Ostman; Asa C V Wilson
Journal:  Proc Natl Acad Sci U S A       Date:  2006-07-24       Impact factor: 11.205

Review 6.  The gene balance hypothesis: from classical genetics to modern genomics.

Authors:  James A Birchler; Reiner A Veitia
Journal:  Plant Cell       Date:  2007-02-09       Impact factor: 11.277

7.  Escape from adaptive conflict after duplication in an anthocyanin pathway gene.

Authors:  David L Des Marais; Mark D Rausher
Journal:  Nature       Date:  2008-06-25       Impact factor: 49.962

8.  Molecular evidence for an ancient duplication of the entire yeast genome.

Authors:  K H Wolfe; D C Shields
Journal:  Nature       Date:  1997-06-12       Impact factor: 49.962

9.  A biological role for the major histocompatibility antigens.

Authors:  P C Doherty; R M Zinkernagel
Journal:  Lancet       Date:  1975-06-28       Impact factor: 79.321

10.  Rate of gene silencing at duplicate loci: a theoretical study and interpretation of data from tetraploid fishes.

Authors:  W H Li
Journal:  Genetics       Date:  1980-05       Impact factor: 4.562

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  557 in total

1.  Phosphorylation of yeast transcription factors correlates with the evolution of novel sequence and function.

Authors:  Mark Kaganovich; Michael Snyder
Journal:  J Proteome Res       Date:  2011-12-09       Impact factor: 4.466

2.  Divergence of duplicate genes in exon-intron structure.

Authors:  Guixia Xu; Chunce Guo; Hongyan Shan; Hongzhi Kong
Journal:  Proc Natl Acad Sci U S A       Date:  2012-01-09       Impact factor: 11.205

3.  The coalescent with selection on copy number variants.

Authors:  Kosuke M Teshima; Hideki Innan
Journal:  Genetics       Date:  2011-12-14       Impact factor: 4.562

4.  Evolution of functional specialization and division of labor.

Authors:  Claus Rueffler; Joachim Hermisson; Günter P Wagner
Journal:  Proc Natl Acad Sci U S A       Date:  2012-01-24       Impact factor: 11.205

5.  Multiple routes to subfunctionalization and gene duplicate specialization.

Authors:  Stephen R Proulx
Journal:  Genetics       Date:  2011-12-05       Impact factor: 4.562

6.  Gene duplication and positive selection explains unusual physiological roles of the relaxin gene in the European rabbit.

Authors:  José Ignacio Arroyo; Federico G Hoffmann; Juan C Opazo
Journal:  J Mol Evol       Date:  2012-02-22       Impact factor: 2.395

7.  The ancient function of RB-E2F pathway: insights from its evolutionary history.

Authors:  Lihuan Cao; Bo Peng; Lei Yao; Xinming Zhang; Kuan Sun; Xianmei Yang; Long Yu
Journal:  Biol Direct       Date:  2010-09-20       Impact factor: 4.540

Review 8.  Mutational effects and the evolution of new protein functions.

Authors:  Misha Soskine; Dan S Tawfik
Journal:  Nat Rev Genet       Date:  2010-08       Impact factor: 53.242

Review 9.  Origins, evolution, and phenotypic impact of new genes.

Authors:  Henrik Kaessmann
Journal:  Genome Res       Date:  2010-07-22       Impact factor: 9.043

10.  Duplicated TLR5 of zebrafish functions as a heterodimeric receptor.

Authors:  Carlos G P Voogdt; Jaap A Wagenaar; Jos P M van Putten
Journal:  Proc Natl Acad Sci U S A       Date:  2018-03-19       Impact factor: 11.205

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