Literature DB >> 20050612

Emerging applications of riboswitches in chemical biology.

Shana Topp1, Justin P Gallivan.   

Abstract

Living systems use RNA sequences known as riboswitches to detect the concentrations of small-molecule metabolites within cells and to regulate the expression of genes that produce these metabolites. Like their natural counterparts, synthetic riboswitches also regulate gene expression in response to small molecules. Because synthetic riboswitches can be engineered to respond to nonendogenous small molecules, they are powerful tools for chemical and synthetic biologists interested in understanding and reprogramming cellular behavior. In this review, we present an overview of natural riboswitches, highlight recent studies toward developing synthetic riboswitches and provide an overview of emerging applications of these RNA switches in chemical biology.

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Year:  2010        PMID: 20050612      PMCID: PMC2811087          DOI: 10.1021/cb900278x

Source DB:  PubMed          Journal:  ACS Chem Biol        ISSN: 1554-8929            Impact factor:   5.100


  81 in total

1.  Metabolite-binding RNA domains are present in the genes of eukaryotes.

Authors:  Narasimhan Sudarsan; Jeffrey E Barrick; Ronald R Breaker
Journal:  RNA       Date:  2003-06       Impact factor: 4.942

2.  Random walks to synthetic riboswitches--a high-throughput selection based on cell motility.

Authors:  Shana Topp; Justin P Gallivan
Journal:  Chembiochem       Date:  2008-01-25       Impact factor: 3.164

Review 3.  Toward reprogramming bacteria with small molecules and RNA.

Authors:  Justin P Gallivan
Journal:  Curr Opin Chem Biol       Date:  2007-11-19       Impact factor: 8.822

4.  Reengineering a natural riboswitch by dual genetic selection.

Authors:  Yoko Nomura; Yohei Yokobayashi
Journal:  J Am Chem Soc       Date:  2007-10-18       Impact factor: 15.419

Review 5.  SELEX--a (r)evolutionary method to generate high-affinity nucleic acid ligands.

Authors:  Regina Stoltenburg; Christine Reinemann; Beate Strehlitz
Journal:  Biomol Eng       Date:  2007-06-16

Review 6.  Progress in computational protein design.

Authors:  Shaun M Lippow; Bruce Tidor
Journal:  Curr Opin Biotechnol       Date:  2007-07-20       Impact factor: 9.740

7.  Screening for engineered neomycin riboswitches that control translation initiation.

Authors:  Julia E Weigand; Martin Sanchez; Ewald-Bernd Gunnesch; Sabrina Zeiher; Renee Schroeder; Beatrix Suess
Journal:  RNA       Date:  2007-11-13       Impact factor: 4.942

Review 8.  Long noncoding RNAs: functional surprises from the RNA world.

Authors:  Jeremy E Wilusz; Hongjae Sunwoo; David L Spector
Journal:  Genes Dev       Date:  2009-07-01       Impact factor: 11.361

9.  Mechanisms of resistance to an amino acid antibiotic that targets translation.

Authors:  Sandro F Ataide; Sharnise N Wilson; Sandy Dang; Theresa E Rogers; Bappaditya Roy; Rajat Banerjee; Tina M Henkin; Michael Ibba
Journal:  ACS Chem Biol       Date:  2007-12-21       Impact factor: 5.100

10.  Conditional gene expression by controlling translation with tetracycline-binding aptamers.

Authors:  Beatrix Suess; Shane Hanson; Christian Berens; Barbara Fink; Renée Schroeder; Wolfgang Hillen
Journal:  Nucleic Acids Res       Date:  2003-04-01       Impact factor: 16.971

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  33 in total

1.  Basis for ligand discrimination between ON and OFF state riboswitch conformations: the case of the SAM-I riboswitch.

Authors:  Vamsi Krishna Boyapati; Wei Huang; Jessica Spedale; Fareed Aboul-Ela
Journal:  RNA       Date:  2012-04-27       Impact factor: 4.942

Review 2.  Global analysis of riboswitches by small-angle X-ray scattering and calorimetry.

Authors:  Jinwei Zhang; Christopher P Jones; Adrian R Ferré-D'Amaré
Journal:  Biochim Biophys Acta       Date:  2014-04-24

3.  Rational design of artificial riboswitches based on ligand-dependent modulation of internal ribosome entry in wheat germ extract and their applications as label-free biosensors.

Authors:  Atsushi Ogawa
Journal:  RNA       Date:  2011-01-11       Impact factor: 4.942

4.  Design criteria for synthetic riboswitches acting on transcription.

Authors:  Manja Wachsmuth; Gesine Domin; Ronny Lorenz; Robert Serfling; Sven Findeiß; Peter F Stadler; Mario Mörl
Journal:  RNA Biol       Date:  2015       Impact factor: 4.652

5.  Tools and systems for evolutionary engineering of biomolecules and microorganisms.

Authors:  Sungho Jang; Minsun Kim; Jaeseong Hwang; Gyoo Yeol Jung
Journal:  J Ind Microbiol Biotechnol       Date:  2019-05-27       Impact factor: 3.346

6.  Conformational heterogeneity of the SAM-I riboswitch transcriptional ON state: a chaperone-like role for S-adenosyl methionine.

Authors:  Wei Huang; Joohyun Kim; Shantenu Jha; Fareed Aboul-Ela
Journal:  J Mol Biol       Date:  2012-03-13       Impact factor: 5.469

7.  An adaptor from translational to transcriptional control enables predictable assembly of complex regulation.

Authors:  Chang C Liu; Lei Qi; Julius B Lucks; Thomas H Segall-Shapiro; Denise Wang; Vivek K Mutalik; Adam P Arkin
Journal:  Nat Methods       Date:  2012-09-30       Impact factor: 28.547

8.  NOT Gate Genetic Circuits to Control Gene Expression in Cyanobacteria.

Authors:  Arnaud Taton; Amy T Ma; Mizuho Ota; Susan S Golden; James W Golden
Journal:  ACS Synth Biol       Date:  2017-08-21       Impact factor: 5.110

9.  Intracellular light-activation of riboswitch activity.

Authors:  Steven Walsh; Laura Gardner; Alexander Deiters; Gavin J Williams
Journal:  Chembiochem       Date:  2014-05-26       Impact factor: 3.164

Review 10.  Synthetic biology approaches in drug discovery and pharmaceutical biotechnology.

Authors:  Heinz Neumann; Petra Neumann-Staubitz
Journal:  Appl Microbiol Biotechnol       Date:  2010-04-16       Impact factor: 4.813

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