Literature DB >> 20016495

Synthetic translational regulation by an L7Ae-kink-turn RNP switch.

Hirohide Saito1, Tetsuhiro Kobayashi, Tomoaki Hara, Yoshihiko Fujita, Karin Hayashi, Rie Furushima, Tan Inoue.   

Abstract

The regulation of cell signaling pathways and the reconstruction of genetic circuits are important aspects of bioengineering research. Both of these goals require molecular devices to transmit information from an input biomacromolecule to the desired outputs. Here, we show that an RNA-protein (RNP)-containing L7Ae-kink-turn interaction can be used to construct translational regulators under control of an input protein that regulates the expression of desired output proteins. We built a system in which L7Ae, an archaeal ribosomal protein, regulates the translation of a designed mRNA in vitro and in human cells. The translational regulator composed of the RNP might provide new therapeutic strategies based on the detection, repair or rewiring of intrinsic cellular defects, and it may also serve as an invaluable tool for the dissection of the behavior of complex, higher-order circuits in the cell.

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Year:  2009        PMID: 20016495     DOI: 10.1038/nchembio.273

Source DB:  PubMed          Journal:  Nat Chem Biol        ISSN: 1552-4450            Impact factor:   15.040


  46 in total

1.  Binding of L7Ae protein to the K-turn of archaeal snoRNAs: a shared RNA binding motif for C/D and H/ACA box snoRNAs in Archaea.

Authors:  Timofey S Rozhdestvensky; Thean Hock Tang; Inna V Tchirkova; Jürgen Brosius; Jean-Pierre Bachellerie; Alexander Hüttenhofer
Journal:  Nucleic Acids Res       Date:  2003-02-01       Impact factor: 16.971

Review 2.  Designing biological systems.

Authors:  David A Drubin; Jeffrey C Way; Pamela A Silver
Journal:  Genes Dev       Date:  2007-02-01       Impact factor: 11.361

3.  Improved aptazyme design and in vivo screening enable riboswitching in bacteria.

Authors:  Markus Wieland; Jörg S Hartig
Journal:  Angew Chem Int Ed Engl       Date:  2008       Impact factor: 15.336

4.  Riboswitches in unexpected places--a synthetic riboswitch in a protein coding region.

Authors:  Shana Topp; Justin P Gallivan
Journal:  RNA       Date:  2008-10-22       Impact factor: 4.942

5.  Engineering complex riboswitch regulation by dual genetic selection.

Authors:  Vandana Sharma; Yoko Nomura; Yohei Yokobayashi
Journal:  J Am Chem Soc       Date:  2008-12-03       Impact factor: 15.419

6.  Time-resolved tracking of a minimum gene expression system reconstituted in giant liposomes.

Authors:  Hirohide Saito; Yusho Kato; Maël Le Berre; Ayako Yamada; Tan Inoue; Kenichi Yosikawa; Damien Baigl
Journal:  Chembiochem       Date:  2009-07-06       Impact factor: 3.164

7.  Specific residues at every third position of siRNA shape its efficient RNAi activity.

Authors:  Takayuki Katoh; Tsutomu Suzuki
Journal:  Nucleic Acids Res       Date:  2007-01-26       Impact factor: 16.971

8.  Induced fit of RNA on binding the L7Ae protein to the kink-turn motif.

Authors:  Ben Turner; Sonya E Melcher; Timothy J Wilson; David G Norman; David M J Lilley
Journal:  RNA       Date:  2005-06-29       Impact factor: 4.942

Review 9.  The small RNA regulators of Escherichia coli: roles and mechanisms*.

Authors:  Susan Gottesman
Journal:  Annu Rev Microbiol       Date:  2004       Impact factor: 16.232

Review 10.  Molecular mechanisms of translational control.

Authors:  Fátima Gebauer; Matthias W Hentze
Journal:  Nat Rev Mol Cell Biol       Date:  2004-10       Impact factor: 94.444

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  50 in total

1.  Rationally designed families of orthogonal RNA regulators of translation.

Authors:  Vivek K Mutalik; Lei Qi; Joao C Guimaraes; Julius B Lucks; Adam P Arkin
Journal:  Nat Chem Biol       Date:  2012-03-25       Impact factor: 15.040

2.  Programmable single-cell mammalian biocomputers.

Authors:  Simon Ausländer; David Ausländer; Marius Müller; Markus Wieland; Martin Fussenegger
Journal:  Nature       Date:  2012-07-05       Impact factor: 49.962

Review 3.  Synthetic RNA switches as a tool for temporal and spatial control over gene expression.

Authors:  Andrew L Chang; Joshua J Wolf; Christina D Smolke
Journal:  Curr Opin Biotechnol       Date:  2012-02-03       Impact factor: 9.740

4.  Synthetic biology: an RNP switch raises a roadblock.

Authors:  Adrian R Ferré-D'Amaré
Journal:  Nat Chem Biol       Date:  2010-01       Impact factor: 15.040

5.  Expanding the synthetic ribonucleoprotein world in cells.

Authors:  Kei Endo; Callum Parr; Hirohide Saito
Journal:  Nat Methods       Date:  2014-11       Impact factor: 28.547

6.  A general design strategy for protein-responsive riboswitches in mammalian cells.

Authors:  Simon Ausländer; Pascal Stücheli; Charlotte Rehm; David Ausländer; Jörg S Hartig; Martin Fussenegger
Journal:  Nat Methods       Date:  2014-10-05       Impact factor: 28.547

Review 7.  Synthetic biology: advancing the design of diverse genetic systems.

Authors:  Yen-Hsiang Wang; Kathy Y Wei; Christina D Smolke
Journal:  Annu Rev Chem Biomol Eng       Date:  2013-02-13       Impact factor: 11.059

Review 8.  Synthetic circuits, devices and modules.

Authors:  Hong Zhang; Taijiao Jiang
Journal:  Protein Cell       Date:  2010-12-10       Impact factor: 14.870

Review 9.  Mammalian synthetic biology: emerging medical applications.

Authors:  Zoltán Kis; Hugo Sant'Ana Pereira; Takayuki Homma; Ryan M Pedrigi; Rob Krams
Journal:  J R Soc Interface       Date:  2015-05-06       Impact factor: 4.118

Review 10.  Engineering Gene Circuits for Mammalian Cell-Based Applications.

Authors:  Simon Ausländer; Martin Fussenegger
Journal:  Cold Spring Harb Perspect Biol       Date:  2016-07-01       Impact factor: 10.005

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