Literature DB >> 22305712

Synthetic RNA switches as a tool for temporal and spatial control over gene expression.

Andrew L Chang1, Joshua J Wolf, Christina D Smolke.   

Abstract

The engineering of biological systems offers significant promise for advances in areas including health and medicine, chemical synthesis, energy production, and environmental sustainability. Realizing this potential requires tools that enable design of sophisticated genetic systems. The functional diversity of RNA makes it an attractive and versatile substrate for programming sensing, information processing, computation, and control functions. Recent advances in the design of synthetic RNA switches capable of detecting and responding to molecular and environmental signals enable dynamic modulation of gene expression through diverse mechanisms, including transcription, splicing, stability, RNA interference, and translation. Furthermore, implementation of these switches in genetic circuits highlights the potential for building synthetic cell systems targeted to applications in environmental remediation and next-generation therapeutics and diagnostics.
Copyright © 2012. Published by Elsevier Ltd.

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Year:  2012        PMID: 22305712      PMCID: PMC3354030          DOI: 10.1016/j.copbio.2012.01.005

Source DB:  PubMed          Journal:  Curr Opin Biotechnol        ISSN: 0958-1669            Impact factor:   9.740


  71 in total

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Journal:  Appl Environ Microbiol       Date:  2010-10-08       Impact factor: 4.792

Review 2.  Intramers and aptamers: applications in protein-function analyses and potential for drug screening.

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Authors:  Franz Narberhaus; Torsten Waldminghaus; Saheli Chowdhury
Journal:  FEMS Microbiol Rev       Date:  2006-01       Impact factor: 16.408

Review 4.  Forty years of in vitro evolution.

Authors:  Gerald F Joyce
Journal:  Angew Chem Int Ed Engl       Date:  2007       Impact factor: 15.336

5.  Improved aptazyme design and in vivo screening enable riboswitching in bacteria.

Authors:  Markus Wieland; Jörg S Hartig
Journal:  Angew Chem Int Ed Engl       Date:  2008       Impact factor: 15.336

6.  Riboswitches in unexpected places--a synthetic riboswitch in a protein coding region.

Authors:  Shana Topp; Justin P Gallivan
Journal:  RNA       Date:  2008-10-22       Impact factor: 4.942

7.  Controlling gene expression in living cells through small molecule-RNA interactions.

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8.  Rational design of artificial riboswitches based on ligand-dependent modulation of internal ribosome entry in wheat germ extract and their applications as label-free biosensors.

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Journal:  RNA       Date:  2011-01-11       Impact factor: 4.942

Review 9.  Molecular mechanisms of long noncoding RNAs.

Authors:  Kevin C Wang; Howard Y Chang
Journal:  Mol Cell       Date:  2011-09-16       Impact factor: 17.970

10.  Genetic control of mammalian T-cell proliferation with synthetic RNA regulatory systems.

Authors:  Yvonne Y Chen; Michael C Jensen; Christina D Smolke
Journal:  Proc Natl Acad Sci U S A       Date:  2010-04-26       Impact factor: 11.205

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  43 in total

Review 1.  Unparalleled control of neural activity using orthogonal pharmacogenetics.

Authors:  Mikhail G Shapiro; Shawnalea J Frazier; Henry A Lester
Journal:  ACS Chem Neurosci       Date:  2012-06-01       Impact factor: 4.418

2.  Detection of Low-Abundance Metabolites in Live Cells Using an RNA Integrator.

Authors:  Mingxu You; Jacob L Litke; Rigumula Wu; Samie R Jaffrey
Journal:  Cell Chem Biol       Date:  2019-02-14       Impact factor: 8.116

3.  Tools and systems for evolutionary engineering of biomolecules and microorganisms.

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Journal:  J Ind Microbiol Biotechnol       Date:  2019-05-27       Impact factor: 3.346

4.  Conformations of an RNA Helix-Junction-Helix Construct Revealed by SAXS Refinement of MD Simulations.

Authors:  Yen-Lin Chen; Tongsik Lee; Ron Elber; Lois Pollack
Journal:  Biophys J       Date:  2018-11-22       Impact factor: 4.033

Review 5.  Strategies for manipulation of oxygen utilization by the electron transfer chain in microbes for metabolic engineering purposes.

Authors:  George N Bennett; Ka-Yiu San
Journal:  J Ind Microbiol Biotechnol       Date:  2016-10-31       Impact factor: 3.346

6.  Precise and reliable gene expression via standard transcription and translation initiation elements.

Authors:  Vivek K Mutalik; Joao C Guimaraes; Guillaume Cambray; Colin Lam; Marc Juul Christoffersen; Quynh-Anh Mai; Andrew B Tran; Morgan Paull; Jay D Keasling; Adam P Arkin; Drew Endy
Journal:  Nat Methods       Date:  2013-03-10       Impact factor: 28.547

7.  Artificial riboswitches for gene expression and replication control of DNA and RNA viruses.

Authors:  Patrick Ketzer; Johanna K Kaufmann; Sarah Engelhardt; Sascha Bossow; Christof von Kalle; Jörg S Hartig; Guy Ungerechts; Dirk M Nettelbeck
Journal:  Proc Natl Acad Sci U S A       Date:  2014-01-21       Impact factor: 11.205

8.  Bottom-up approaches in synthetic biology and biomaterials for tissue engineering applications.

Authors:  Mitchell S Weisenberger; Tara L Deans
Journal:  J Ind Microbiol Biotechnol       Date:  2018-03-19       Impact factor: 3.346

Review 9.  Advances in the determination of nucleic acid conformational ensembles.

Authors:  Loïc Salmon; Shan Yang; Hashim M Al-Hashimi
Journal:  Annu Rev Phys Chem       Date:  2013-12-16       Impact factor: 12.703

10.  incaRNAfbinv: a web server for the fragment-based design of RNA sequences.

Authors:  Matan Drory Retwitzer; Vladimir Reinharz; Yann Ponty; Jérôme Waldispühl; Danny Barash
Journal:  Nucleic Acids Res       Date:  2016-05-16       Impact factor: 16.971

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