Literature DB >> 17289915

Designing biological systems.

David A Drubin1, Jeffrey C Way, Pamela A Silver.   

Abstract

The design of artificial biological systems and the understanding of their natural counterparts are key objectives of the emerging discipline of synthetic biology. Toward both ends, research in synthetic biology has primarily focused on the construction of simple devices, such as transcription-based oscillators and switches. Construction of such devices should provide us with insight on the design of natural systems, indicating whether our understanding is complete or whether there are still gaps in our knowledge. Construction of simple biological systems may also lay the groundwork for the construction of more complex systems that have practical utility. To realize its full potential, biological systems design borrows from the allied fields of protein design and metabolic engineering. In this review, we describe the scientific accomplishments in this field, as well as its forays into biological part standardization and education of future biological designers.

Mesh:

Year:  2007        PMID: 17289915     DOI: 10.1101/gad.1507207

Source DB:  PubMed          Journal:  Genes Dev        ISSN: 0890-9369            Impact factor:   11.361


  44 in total

1.  A data-integrated method for analyzing stochastic biochemical networks.

Authors:  Michael W Chevalier; Hana El-Samad
Journal:  J Chem Phys       Date:  2011-12-07       Impact factor: 3.488

2.  Expression of Mycoplasma proteins carrying an affinity tag in M. pneumoniae allows rapid purification and circumvents problems related to the aberrant genetic code.

Authors:  Sebastian R Schmidl; Claudine Hames; Jörg Stülke
Journal:  Appl Environ Microbiol       Date:  2007-10-12       Impact factor: 4.792

3.  Rational design of memory in eukaryotic cells.

Authors:  Caroline M Ajo-Franklin; David A Drubin; Julian A Eskin; Elaine P S Gee; Dirk Landgraf; Ira Phillips; Pamela A Silver
Journal:  Genes Dev       Date:  2007-09-15       Impact factor: 11.361

4.  Enzymatic assembly of DNA molecules up to several hundred kilobases.

Authors:  Daniel G Gibson; Lei Young; Ray-Yuan Chuang; J Craig Venter; Clyde A Hutchison; Hamilton O Smith
Journal:  Nat Methods       Date:  2009-04-12       Impact factor: 28.547

Review 5.  Harnessing nature's toolbox: regulatory elements for synthetic biology.

Authors:  Patrick M Boyle; Pamela A Silver
Journal:  J R Soc Interface       Date:  2009-03-04       Impact factor: 4.118

Review 6.  You're one in a googol: optimizing genes for protein expression.

Authors:  Mark Welch; Alan Villalobos; Claes Gustafsson; Jeremy Minshull
Journal:  J R Soc Interface       Date:  2009-03-11       Impact factor: 4.118

7.  Teaching synthetic biology, bioinformatics and engineering to undergraduates: the interdisciplinary Build-a-Genome course.

Authors:  Jessica S Dymond; Lisa Z Scheifele; Sarah Richardson; Pablo Lee; Srinivasan Chandrasegaran; Joel S Bader; Jef D Boeke
Journal:  Genetics       Date:  2008-11-17       Impact factor: 4.562

8.  Synthetic translational regulation by an L7Ae-kink-turn RNP switch.

Authors:  Hirohide Saito; Tetsuhiro Kobayashi; Tomoaki Hara; Yoshihiko Fujita; Karin Hayashi; Rie Furushima; Tan Inoue
Journal:  Nat Chem Biol       Date:  2009-12-13       Impact factor: 15.040

Review 9.  Synthetic morphology: prospects for engineered, self-constructing anatomies.

Authors:  Jamie A Davies
Journal:  J Anat       Date:  2008-06       Impact factor: 2.610

10.  Engineering stochasticity in gene expression.

Authors:  Jeffrey J Tabor; Travis S Bayer; Zachary B Simpson; Matthew Levy; Andrew D Ellington
Journal:  Mol Biosyst       Date:  2008-05-01
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