Literature DB >> 20000466

Detection of a transient intermediate in a rapid protein folding process by solid-state nuclear magnetic resonance.

Kan-Nian Hu1, Wai-Ming Yau, Robert Tycko.   

Abstract

We describe the use of solid-state NMR spectroscopy to characterize a partially folded state of the 35-residue helical protein HP35 created by rapid freeze-quenching from a thermally unfolded state on the 10-20 micros time scale. Two-dimensional solid-state (13)C NMR spectra of (13)C-labeled HP35 in frozen glycerol/water solution exhibit two sets of signals, one corresponding to strongly unfolded protein molecules and the other to an ensemble of molecules having native helical secondary structure but incomplete tertiary structure. The NMR data indicate that secondary structure forms within the freeze-quenching time scale but that full folding involves a slower phase of structural annealing. The approximately 5 micros folding time observed in earlier studies of HP35 by time-resolved optical techniques may not represent the time scale for full folding.

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Year:  2010        PMID: 20000466      PMCID: PMC2805027          DOI: 10.1021/ja908471n

Source DB:  PubMed          Journal:  J Am Chem Soc        ISSN: 0002-7863            Impact factor:   15.419


  19 in total

1.  Dynamic NMR line-shape analysis demonstrates that the villin headpiece subdomain folds on the microsecond time scale.

Authors:  Minghui Wang; Yuefeng Tang; Satoshi Sato; Liliya Vugmeyster; C James McKnight; Daniel P Raleigh
Journal:  J Am Chem Soc       Date:  2003-05-21       Impact factor: 15.419

2.  Side-chain dynamics and protein folding.

Authors:  Edo Kussell; Jun Shimada; Eugene I Shakhnovich
Journal:  Proteins       Date:  2003-08-01

3.  Probing site-specific conformational distributions in protein folding with solid-state NMR.

Authors:  Robert H Havlin; Robert Tycko
Journal:  Proc Natl Acad Sci U S A       Date:  2005-02-17       Impact factor: 11.205

4.  High-resolution x-ray crystal structures of the villin headpiece subdomain, an ultrafast folding protein.

Authors:  Thang K Chiu; Jan Kubelka; Regine Herbst-Irmer; William A Eaton; James Hofrichter; David R Davies
Journal:  Proc Natl Acad Sci U S A       Date:  2005-05-13       Impact factor: 11.205

5.  Folding free-energy landscape of villin headpiece subdomain from molecular dynamics simulations.

Authors:  Hongxing Lei; Chun Wu; Haiguang Liu; Yong Duan
Journal:  Proc Natl Acad Sci U S A       Date:  2007-03-12       Impact factor: 11.205

6.  Two-stage folding of HP-35 from ab initio simulations.

Authors:  Hongxing Lei; Yong Duan
Journal:  J Mol Biol       Date:  2007-04-20       Impact factor: 5.469

7.  Heterogeneity even at the speed limit of folding: large-scale molecular dynamics study of a fast-folding variant of the villin headpiece.

Authors:  Daniel L Ensign; Peter M Kasson; Vijay S Pande
Journal:  J Mol Biol       Date:  2007-09-29       Impact factor: 5.469

8.  Universality and diversity of folding mechanics for three-helix bundle proteins.

Authors:  Jae Shick Yang; Stefan Wallin; Eugene I Shakhnovich
Journal:  Proc Natl Acad Sci U S A       Date:  2008-01-14       Impact factor: 11.205

9.  NMR structure of the 35-residue villin headpiece subdomain.

Authors:  C J McKnight; P T Matsudaira; P S Kim
Journal:  Nat Struct Biol       Date:  1997-03

10.  1H, 15N, and 13C NMR signal assignments of IIIGlc, a signal-transducing protein of Escherichia coli, using three-dimensional triple-resonance techniques.

Authors:  J G Pelton; D A Torchia; N D Meadow; C Y Wong; S Roseman
Journal:  Biochemistry       Date:  1991-10-15       Impact factor: 3.162

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  40 in total

1.  Low folding cooperativity of HP35 revealed by single-molecule force spectroscopy and molecular dynamics simulation.

Authors:  Chunmei Lv; Cheng Tan; Meng Qin; Dawei Zou; Yi Cao; Wei Wang
Journal:  Biophys J       Date:  2012-04-18       Impact factor: 4.033

2.  Folding network of villin headpiece subdomain.

Authors:  Hongxing Lei; Yao Su; Lian Jin; Yong Duan
Journal:  Biophys J       Date:  2010-11-17       Impact factor: 4.033

3.  NMR paves the way for atomic level descriptions of sparsely populated, transiently formed biomolecular conformers.

Authors:  Ashok Sekhar; Lewis E Kay
Journal:  Proc Natl Acad Sci U S A       Date:  2013-07-18       Impact factor: 11.205

4.  Practical considerations over spectral quality in solid state NMR spectroscopy of soluble proteins.

Authors:  Marco Fragai; Claudio Luchinat; Giacomo Parigi; Enrico Ravera
Journal:  J Biomol NMR       Date:  2013-08-30       Impact factor: 2.835

5.  The protein folding network indicates that the ultrafast folding mutant of villin headpiece subdomain has a deeper folding funnel.

Authors:  Hongxing Lei; Changjun Chen; Yi Xiao; Yong Duan
Journal:  J Chem Phys       Date:  2011-05-28       Impact factor: 3.488

6.  Heteronuclear proton assisted recoupling.

Authors:  Gaël De Paëpe; Józef R Lewandowski; Antoine Loquet; Matt Eddy; Simon Megy; Anja Böckmann; Robert G Griffin
Journal:  J Chem Phys       Date:  2011-03-07       Impact factor: 3.488

7.  An unlocking/relocking barrier in conformational fluctuations of villin headpiece subdomain.

Authors:  Andreas Reiner; Peter Henklein; Thomas Kiefhaber
Journal:  Proc Natl Acad Sci U S A       Date:  2010-03-01       Impact factor: 11.205

8.  Successive Stages of Amyloid-β Self-Assembly Characterized by Solid-State Nuclear Magnetic Resonance with Dynamic Nuclear Polarization.

Authors:  Alexey Potapov; Wai-Ming Yau; Rodolfo Ghirlando; Kent R Thurber; Robert Tycko
Journal:  J Am Chem Soc       Date:  2015-06-19       Impact factor: 15.419

9.  Heterogeneity in the Folding of Villin Headpiece Subdomain HP36.

Authors:  Sureshbabu Nagarajan; Shifeng Xiao; Daniel P Raleigh; R Brian Dyer
Journal:  J Phys Chem B       Date:  2018-08-28       Impact factor: 2.991

10.  Cryogenic Sample Loading into a Magic Angle Spinning Nuclear Magnetic Resonance Spectrometer that Preserves Cellular Viability.

Authors:  Rupam Ghosh; Jaka Kragelj; Yiling Xiao; Kendra K Frederick
Journal:  J Vis Exp       Date:  2020-09-01       Impact factor: 1.355

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