Literature DB >> 19967983

Unlocking fungal cryptic natural products.

Yi-Ming Chiang1, Kuan-Han Lee, James F Sanchez, Nancy P Keller, Clay C C Wang.   

Abstract

Recent published sequencing of fungal genomes has revealed that these microorganisms have a surprisingly large number of secondary metabolite pathways that can serve as potential sources for new and useful natural products. Most of the secondary metabolites and their biosynthesis pathways are currently unknown, possibly because they are produced in very small amounts and are thus difficult to detect or are produced only under specific conditions. Elucidating these fungal metabolites will require new molecular genetic tools, better understanding of the regulation of secondary metabolism, and state of the art analytical methods. This review describes recent strategies to mine the cryptic natural products and their biosynthetic pathways in fungi.

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Year:  2009        PMID: 19967983      PMCID: PMC3101174     

Source DB:  PubMed          Journal:  Nat Prod Commun        ISSN: 1555-9475            Impact factor:   0.986


  33 in total

Review 1.  Horizontal gene transfer and the evolution of secondary metabolite gene clusters in fungi: an hypothesis.

Authors:  J D Walton
Journal:  Fungal Genet Biol       Date:  2000-08       Impact factor: 3.495

Review 2.  Big effects from small changes: possible ways to explore nature's chemical diversity.

Authors:  Helge Björn Bode; Barbara Bethe; Regina Höfs; Axel Zeeck
Journal:  Chembiochem       Date:  2002-07-02       Impact factor: 3.164

3.  LaeA, a regulator of secondary metabolism in Aspergillus spp.

Authors:  Jin Woo Bok; Nancy P Keller
Journal:  Eukaryot Cell       Date:  2004-04

4.  A chemical epigenetics approach for engineering the in situ biosynthesis of a cryptic natural product from Aspergillus niger.

Authors:  Jon C Henrikson; Ashley R Hoover; P Matthew Joyner; Robert H Cichewicz
Journal:  Org Biomol Chem       Date:  2008-12-11       Impact factor: 3.876

5.  Tri6 encodes an unusual zinc finger protein involved in regulation of trichothecene biosynthesis in Fusarium sporotrichioides.

Authors:  R H Proctor; T M Hohn; S P McCormick; A E Desjardins
Journal:  Appl Environ Microbiol       Date:  1995-05       Impact factor: 4.792

6.  The 2008 update of the Aspergillus nidulans genome annotation: a community effort.

Authors:  Jennifer Russo Wortman; Jane Mabey Gilsenan; Vinita Joardar; Jennifer Deegan; John Clutterbuck; Mikael R Andersen; David Archer; Mojca Bencina; Gerhard Braus; Pedro Coutinho; Hans von Döhren; John Doonan; Arnold J M Driessen; Pawel Durek; Eduardo Espeso; Erzsébet Fekete; Michel Flipphi; Carlos Garcia Estrada; Steven Geysens; Gustavo Goldman; Piet W J de Groot; Kim Hansen; Steven D Harris; Thorsten Heinekamp; Kerstin Helmstaedt; Bernard Henrissat; Gerald Hofmann; Tim Homan; Tetsuya Horio; Hiroyuki Horiuchi; Steve James; Meriel Jones; Levente Karaffa; Zsolt Karányi; Masashi Kato; Nancy Keller; Diane E Kelly; Jan A K W Kiel; Jung-Mi Kim; Ida J van der Klei; Frans M Klis; Andriy Kovalchuk; Nada Krasevec; Christian P Kubicek; Bo Liu; Andrew Maccabe; Vera Meyer; Pete Mirabito; Márton Miskei; Magdalena Mos; Jonathan Mullins; David R Nelson; Jens Nielsen; Berl R Oakley; Stephen A Osmani; Tiina Pakula; Andrzej Paszewski; Ian Paulsen; Sebastian Pilsyk; István Pócsi; Peter J Punt; Arthur F J Ram; Qinghu Ren; Xavier Robellet; Geoff Robson; Bernhard Seiboth; Piet van Solingen; Thomas Specht; Jibin Sun; Naimeh Taheri-Talesh; Norio Takeshita; Dave Ussery; Patricia A vanKuyk; Hans Visser; Peter J I van de Vondervoort; Ronald P de Vries; Jonathan Walton; Xin Xiang; Yi Xiong; An Ping Zeng; Bernd W Brandt; Michael J Cornell; Cees A M J J van den Hondel; Jacob Visser; Stephen G Oliver; Geoffrey Turner
Journal:  Fungal Genet Biol       Date:  2008-12-25       Impact factor: 3.495

7.  Chromatin-level regulation of biosynthetic gene clusters.

Authors:  Jin Woo Bok; Yi-Ming Chiang; Edyta Szewczyk; Yazmid Reyes-Dominguez; Ashley D Davidson; James F Sanchez; Hsien-Chun Lo; Kenji Watanabe; Joseph Strauss; Berl R Oakley; Clay C C Wang; Nancy P Keller
Journal:  Nat Chem Biol       Date:  2009-07       Impact factor: 15.040

8.  Highly efficient gene replacements in Neurospora strains deficient for nonhomologous end-joining.

Authors:  Yuuko Ninomiya; Keiichiro Suzuki; Chizu Ishii; Hirokazu Inoue
Journal:  Proc Natl Acad Sci U S A       Date:  2004-08-06       Impact factor: 11.205

9.  Identification and characterization of the asperthecin gene cluster of Aspergillus nidulans.

Authors:  Edyta Szewczyk; Yi-Ming Chiang; C Elizabeth Oakley; Ashley D Davidson; Clay C C Wang; Berl R Oakley
Journal:  Appl Environ Microbiol       Date:  2008-10-31       Impact factor: 4.792

10.  A gene cluster containing two fungal polyketide synthases encodes the biosynthetic pathway for a polyketide, asperfuranone, in Aspergillus nidulans.

Authors:  Yi-Ming Chiang; Edyta Szewczyk; Ashley D Davidson; Nancy Keller; Berl R Oakley; Clay C C Wang
Journal:  J Am Chem Soc       Date:  2009-03-04       Impact factor: 15.419

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  35 in total

1.  Activation of a silent fungal polyketide biosynthesis pathway through regulatory cross talk with a cryptic nonribosomal peptide synthetase gene cluster.

Authors:  Sebastian Bergmann; Alexander N Funk; Kirstin Scherlach; Volker Schroeckh; Ekaterina Shelest; Uwe Horn; Christian Hertweck; Axel A Brakhage
Journal:  Appl Environ Microbiol       Date:  2010-10-15       Impact factor: 4.792

Review 2.  New insights into the formation of fungal aromatic polyketides.

Authors:  Jason M Crawford; Craig A Townsend
Journal:  Nat Rev Microbiol       Date:  2010-12       Impact factor: 60.633

3.  Fungal gene expression on demand: an inducible, tunable, and metabolism-independent expression system for Aspergillus niger.

Authors:  Vera Meyer; Franziska Wanka; Janneke van Gent; Mark Arentshorst; Cees A M J J van den Hondel; Arthur F J Ram
Journal:  Appl Environ Microbiol       Date:  2011-03-04       Impact factor: 4.792

4.  Clustered patterns of species origins of nature-derived drugs and clues for future bioprospecting.

Authors:  Feng Zhu; Chu Qin; Lin Tao; Xin Liu; Zhe Shi; Xiaohua Ma; Jia Jia; Ying Tan; Cheng Cui; Jinshun Lin; Chunyan Tan; Yuyang Jiang; Yuzong Chen
Journal:  Proc Natl Acad Sci U S A       Date:  2011-07-18       Impact factor: 11.205

5.  An Insight into the Secondary Metabolism of Muscodor yucatanensis: Small-Molecule Epigenetic Modifiers Induce Expression of Secondary Metabolism-Related Genes and Production of New Metabolites in the Endophyte.

Authors:  Masroor Qadri; Yedukondalu Nalli; Shreyans K Jain; Asha Chaubey; Asif Ali; Gary A Strobel; Ram A Vishwakarma; Syed Riyaz-Ul-Hassan
Journal:  Microb Ecol       Date:  2016-12-06       Impact factor: 4.552

Review 6.  Renaissance in phytomedicines: promising implications of NGS technologies.

Authors:  Sonal Sharma; Neeta Shrivastava
Journal:  Planta       Date:  2016-03-22       Impact factor: 4.116

Review 7.  Unraveling polyketide synthesis in members of the genus Aspergillus.

Authors:  Yi-Ming Chiang; Berl R Oakley; Nancy P Keller; Clay C C Wang
Journal:  Appl Microbiol Biotechnol       Date:  2010-04-02       Impact factor: 4.813

8.  Histone deacetylase inhibitors as a tool to up-regulate new fungal biosynthetic products: isolation of EGM-556, a cyclodepsipeptide, from Microascus sp.

Authors:  Hélène C Vervoort; Marija Drašković; Phillip Crews
Journal:  Org Lett       Date:  2010-12-21       Impact factor: 6.005

Review 9.  Symbiosis-inspired approaches to antibiotic discovery.

Authors:  Navid Adnani; Scott R Rajski; Tim S Bugni
Journal:  Nat Prod Rep       Date:  2017-07-06       Impact factor: 13.423

10.  Rice-induced secondary metabolite gene expression in Aspergillus nidulans.

Authors:  Christopher J Lacriola; Shaun P Falk; Bernard Weisblum
Journal:  J Ind Microbiol Biotechnol       Date:  2020-11-18       Impact factor: 3.346

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