Literature DB >> 19958834

The resolution dependence of optimal exposures in liquid nitrogen temperature electron cryomicroscopy of catalase crystals.

Lindsay A Baker1, Eric A Smith, Stephanie A Bueler, John L Rubinstein.   

Abstract

Electron beam damage is the fundamental limit to resolution in electron cryomicroscopy (cryo-EM) of frozen, hydrated specimens. Radiation damage increases with the number of electrons used to obtain an image and affects information at higher spatial frequencies before low-resolution information. For the experimentalist, a balance exists between electron exposures sufficient to obtain a useful signal-to-noise ratio (SNR) in images and exposures that limit the damage to structural features. In single particle cryo-EM this balance is particularly delicate: low-resolution features must be imaged with a sufficient SNR to allow image alignment so that high-resolution features recorded below the noise level can be recovered by averaging independent images. By measuring the fading of Fourier components from images obtained at 200 kV of thin crystals of catalase embedded in ice, we have determined the electron exposures that will maximize the SNR at resolutions between 86 and 2.9A. These data allow for a rational choice of exposure for single particle cryo-EM. For example, for 20A resolution, the SNR is maximized at approximately 20e(-)/A(2), whereas for 3A resolution, it is maximized at approximately 10 e(-)/A(2). We illustrate the effects of exposure in single particle cryo-EM with data collected at approximately 12-15 and approximately 24-30 e(-)/A(2). (c) 2009 Elsevier Inc. All rights reserved.

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Year:  2009        PMID: 19958834     DOI: 10.1016/j.jsb.2009.11.014

Source DB:  PubMed          Journal:  J Struct Biol        ISSN: 1047-8477            Impact factor:   2.867


  31 in total

1.  Subnanometre-resolution structure of the intact Thermus thermophilus H+-driven ATP synthase.

Authors:  Wilson C Y Lau; John L Rubinstein
Journal:  Nature       Date:  2011-12-18       Impact factor: 49.962

2.  Arrangement of subunits in intact mammalian mitochondrial ATP synthase determined by cryo-EM.

Authors:  Lindsay A Baker; Ian N Watt; Michael J Runswick; John E Walker; John L Rubinstein
Journal:  Proc Natl Acad Sci U S A       Date:  2012-07-02       Impact factor: 11.205

3.  Direct electron detection yields cryo-EM reconstructions at resolutions beyond 3/4 Nyquist frequency.

Authors:  Benjamin E Bammes; Ryan H Rochat; Joanita Jakana; Dong-Hua Chen; Wah Chiu
Journal:  J Struct Biol       Date:  2012-01-21       Impact factor: 2.867

Review 4.  Invited review article: Methods for imaging weak-phase objects in electron microscopy.

Authors:  Robert M Glaeser
Journal:  Rev Sci Instrum       Date:  2013-11       Impact factor: 1.523

5.  Analysis of Global and Site-Specific Radiation Damage in Cryo-EM.

Authors:  Johan Hattne; Dan Shi; Calina Glynn; Chih-Te Zee; Marcus Gallagher-Jones; Michael W Martynowycz; Jose A Rodriguez; Tamir Gonen
Journal:  Structure       Date:  2018-04-26       Impact factor: 5.006

Review 6.  Reaching the information limit in cryo-EM of biological macromolecules: experimental aspects.

Authors:  Robert M Glaeser; Richard J Hall
Journal:  Biophys J       Date:  2011-05-18       Impact factor: 4.033

Review 7.  Electron cryomicroscopy of membrane proteins: specimen preparation for two-dimensional crystals and single particles.

Authors:  Ingeborg Schmidt-Krey; John L Rubinstein
Journal:  Micron       Date:  2010-07-16       Impact factor: 2.251

Review 8.  Problems in obtaining perfect images by single-particle electron cryomicroscopy of biological structures in amorphous ice.

Authors:  Richard Henderson; Greg McMullan
Journal:  Microscopy (Oxf)       Date:  2013-01-04       Impact factor: 1.571

9.  Structure of β-galactosidase at 3.2-Å resolution obtained by cryo-electron microscopy.

Authors:  Alberto Bartesaghi; Doreen Matthies; Soojay Banerjee; Alan Merk; Sriram Subramaniam
Journal:  Proc Natl Acad Sci U S A       Date:  2014-07-28       Impact factor: 11.205

10.  Atomic Resolution Cryo-EM Structure of β-Galactosidase.

Authors:  Alberto Bartesaghi; Cecilia Aguerrebere; Veronica Falconieri; Soojay Banerjee; Lesley A Earl; Xing Zhu; Nikolaus Grigorieff; Jacqueline L S Milne; Guillermo Sapiro; Xiongwu Wu; Sriram Subramaniam
Journal:  Structure       Date:  2018-05-10       Impact factor: 5.006

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