Literature DB >> 19953682

Comparative analysis to guide quality improvements in proteomics.

Matthias Mann1.   

Abstract

Mesh：

Year:  2009        PMID： 19953682     DOI： 10.1038/nmeth1009-717

Source DB:  PubMed          Journal:  Nat Methods        ISSN： 1548-7091            Impact factor:   28.547


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  19 in total

1.  Empirical statistical model to estimate the accuracy of peptide identifications made by MS/MS and database search.

Authors:  Andrew Keller; Alexey I Nesvizhskii; Eugene Kolker; Ruedi Aebersold
Journal:  Anal Chem       Date:  2002-10-15       Impact factor: 6.986

2.  Comparative evaluation of mass spectrometry platforms used in large-scale proteomics investigations.

Authors:  Joshua E Elias; Wilhelm Haas; Brendan K Faherty; Steven P Gygi
Journal:  Nat Methods       Date:  2005-09       Impact factor: 28.547

3.  Comprehensive mass-spectrometry-based proteome quantification of haploid versus diploid yeast.

Authors:  Lyris M F de Godoy; Jesper V Olsen; Jürgen Cox; Michael L Nielsen; Nina C Hubner; Florian Fröhlich; Tobias C Walther; Matthias Mann
Journal:  Nature       Date:  2008-09-28       Impact factor: 49.962

4.  Combined use of RNAi and quantitative proteomics to study gene function in Drosophila.

Authors:  Tiziana Bonaldi; Tobias Straub; Jürgen Cox; Chanchal Kumar; Peter B Becker; Matthias Mann
Journal:  Mol Cell       Date:  2008-09-05       Impact factor: 17.970

5.  Precision proteomics: the case for high resolution and high mass accuracy.

Authors:  Matthias Mann; Neil L Kelleher
Journal:  Proc Natl Acad Sci U S A       Date:  2008-09-25       Impact factor: 11.205

6.  Multi-site assessment of the precision and reproducibility of multiple reaction monitoring-based measurements of proteins in plasma.

Authors:  Terri A Addona; Susan E Abbatiello; Birgit Schilling; Steven J Skates; D R Mani; David M Bunk; Clifford H Spiegelman; Lisa J Zimmerman; Amy-Joan L Ham; Hasmik Keshishian; Steven C Hall; Simon Allen; Ronald K Blackman; Christoph H Borchers; Charles Buck; Helene L Cardasis; Michael P Cusack; Nathan G Dodder; Bradford W Gibson; Jason M Held; Tara Hiltke; Angela Jackson; Eric B Johansen; Christopher R Kinsinger; Jing Li; Mehdi Mesri; Thomas A Neubert; Richard K Niles; Trenton C Pulsipher; David Ransohoff; Henry Rodriguez; Paul A Rudnick; Derek Smith; David L Tabb; Tony J Tegeler; Asokan M Variyath; Lorenzo J Vega-Montoto; Asa Wahlander; Sofia Waldemarson; Mu Wang; Jeffrey R Whiteaker; Lei Zhao; N Leigh Anderson; Susan J Fisher; Daniel C Liebler; Amanda G Paulovich; Fred E Regnier; Paul Tempst; Steven A Carr
Journal:  Nat Biotechnol       Date:  2009-06-28       Impact factor: 54.908

7.  Global, in vivo, and site-specific phosphorylation dynamics in signaling networks.

Authors:  Jesper V Olsen; Blagoy Blagoev; Florian Gnad; Boris Macek; Chanchal Kumar; Peter Mortensen; Matthias Mann
Journal:  Cell       Date:  2006-11-03       Impact factor: 41.582

8.  Spectral probabilities and generating functions of tandem mass spectra: a strike against decoy databases.

Authors:  Sangtae Kim; Nitin Gupta; Pavel A Pevzner
Journal:  J Proteome Res       Date:  2008-07-03       Impact factor: 4.466

9.  A HUPO test sample study reveals common problems in mass spectrometry-based proteomics.

Authors:  Alexander W Bell; Eric W Deutsch; Catherine E Au; Robert E Kearney; Ron Beavis; Salvatore Sechi; Tommy Nilsson; John J M Bergeron
Journal:  Nat Methods       Date:  2009-06       Impact factor: 28.547

10.  Systems-wide analysis of a phosphatase knock-down by quantitative proteomics and phosphoproteomics.

Authors:  Maximiliane Hilger; Tiziana Bonaldi; Florian Gnad; Matthias Mann
Journal:  Mol Cell Proteomics       Date:  2009-05-09       Impact factor: 5.911
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  21 in total

1.  Improving validation practices in "omics" research.

Authors:  John P A Ioannidis; Muin J Khoury
Journal:  Science       Date:  2011-12-02       Impact factor: 47.728

2.  Mass spectrometry in high-throughput proteomics: ready for the big time.

Authors:  Tommy Nilsson; Matthias Mann; Ruedi Aebersold; John R Yates; Amos Bairoch; John J M Bergeron
Journal:  Nat Methods       Date:  2010-09       Impact factor: 28.547

3.  Relative, label-free protein quantitation: spectral counting error statistics from nine replicate MudPIT samples.

Authors:  Bret Cooper; Jian Feng; Wesley M Garrett
Journal:  J Am Soc Mass Spectrom       Date:  2010-05-06       Impact factor: 3.109

4.  Proteomics retrenches.

Authors:  Peter Mitchell
Journal:  Nat Biotechnol       Date:  2010-07       Impact factor: 54.908

Review 5.  Proteomic approaches and identification of novel therapeutic targets for alcoholism.

Authors:  Giorgio Gorini; R Adron Harris; R Dayne Mayfield
Journal:  Neuropsychopharmacology       Date:  2013-07-31       Impact factor: 7.853

Review 6.  Quality assessment for clinical proteomics.

Authors:  David L Tabb
Journal:  Clin Biochem       Date:  2012-12-12       Impact factor: 3.281

Review 7.  Proteomics of plant pathogenic fungi.

Authors:  Raquel González-Fernández; Elena Prats; Jesús V Jorrín-Novo
Journal:  J Biomed Biotechnol       Date:  2010-05-27

8.  Proteomics on an Orbitrap benchtop mass spectrometer using all-ion fragmentation.

Authors:  Tamar Geiger; Juergen Cox; Matthias Mann
Journal:  Mol Cell Proteomics       Date:  2010-07-07       Impact factor: 5.911

9.  Implementation of statistical process control for proteomic experiments via LC MS/MS.

Authors:  Michael S Bereman; Richard Johnson; James Bollinger; Yuval Boss; Nick Shulman; Brendan MacLean; Andrew N Hoofnagle; Michael J MacCoss
Journal:  J Am Soc Mass Spectrom       Date:  2014-02-05       Impact factor: 3.109

Review 10.  Studying Cellular Signal Transduction with OMIC Technologies.

Authors:  Benjamin D Landry; David C Clarke; Michael J Lee
Journal:  J Mol Biol       Date:  2015-08-03       Impact factor: 5.469
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