Literature DB >> 20805795

Mass spectrometry in high-throughput proteomics: ready for the big time.

Tommy Nilsson1, Matthias Mann, Ruedi Aebersold, John R Yates, Amos Bairoch, John J M Bergeron.   

Abstract

Mass spectrometry has evolved and matured to a level where it is able to assess the complexity of the human proteome. We discuss some of the expected challenges ahead and promising strategies for success.

Entities:  

Mesh：

Substances：

Year:  2010        PMID： 20805795     DOI： 10.1038/nmeth0910-681

Source DB:  PubMed          Journal:  Nat Methods        ISSN： 1548-7091            Impact factor:   28.547


  43 in total

1.  A vision for the future of genomics research.

Authors:  Francis S Collins; Eric D Green; Alan E Guttmacher; Mark S Guyer
Journal:  Nature       Date:  2003-04-14       Impact factor: 49.962

2.  Tandem MS analysis of brain clathrin-coated vesicles reveals their critical involvement in synaptic vesicle recycling.

Authors:  Francois Blondeau; Brigitte Ritter; Patrick D Allaire; Sylwia Wasiak; Martine Girard; Natasha K Hussain; Annie Angers; Valerie Legendre-Guillemin; Line Roy; Daniel Boismenu; Robert E Kearney; Alexander W Bell; John J M Bergeron; Peter S McPherson
Journal:  Proc Natl Acad Sci U S A       Date:  2004-03-08       Impact factor: 11.205

3.  Options and considerations when selecting a quantitative proteomics strategy.

Authors:  Bruno Domon; Ruedi Aebersold
Journal:  Nat Biotechnol       Date:  2010-07-09       Impact factor: 54.908

4.  Multi-site assessment of the precision and reproducibility of multiple reaction monitoring-based measurements of proteins in plasma.

Authors:  Terri A Addona; Susan E Abbatiello; Birgit Schilling; Steven J Skates; D R Mani; David M Bunk; Clifford H Spiegelman; Lisa J Zimmerman; Amy-Joan L Ham; Hasmik Keshishian; Steven C Hall; Simon Allen; Ronald K Blackman; Christoph H Borchers; Charles Buck; Helene L Cardasis; Michael P Cusack; Nathan G Dodder; Bradford W Gibson; Jason M Held; Tara Hiltke; Angela Jackson; Eric B Johansen; Christopher R Kinsinger; Jing Li; Mehdi Mesri; Thomas A Neubert; Richard K Niles; Trenton C Pulsipher; David Ransohoff; Henry Rodriguez; Paul A Rudnick; Derek Smith; David L Tabb; Tony J Tegeler; Asokan M Variyath; Lorenzo J Vega-Montoto; Asa Wahlander; Sofia Waldemarson; Mu Wang; Jeffrey R Whiteaker; Lei Zhao; N Leigh Anderson; Susan J Fisher; Daniel C Liebler; Amanda G Paulovich; Fred E Regnier; Paul Tempst; Steven A Carr
Journal:  Nat Biotechnol       Date:  2009-06-28       Impact factor: 54.908

5.  Use of proteomic patterns in serum to identify ovarian cancer.

Authors:  Emanuel F Petricoin; Ali M Ardekani; Ben A Hitt; Peter J Levine; Vincent A Fusaro; Seth M Steinberg; Gordon B Mills; Charles Simone; David A Fishman; Elise C Kohn; Lance A Liotta
Journal:  Lancet       Date:  2002-02-16       Impact factor: 79.321

6.  Finishing the euchromatic sequence of the human genome.

Authors: 
Journal:  Nature       Date:  2004-10-21       Impact factor: 49.962

7.  Characterization of tau in cerebrospinal fluid using mass spectrometry.

Authors:  Erik Portelius; Sara F Hansson; Ai Jun Tran; Henrik Zetterberg; Pierre Grognet; Eugeen Vanmechelen; Kina Höglund; Gunnar Brinkmalm; Ann Westman-Brinkmalm; Eckhard Nordhoff; Kaj Blennow; Johan Gobom
Journal:  J Proteome Res       Date:  2008-03-20       Impact factor: 4.466

8.  Genome-wide analysis in vivo of translation with nucleotide resolution using ribosome profiling.

Authors:  Nicholas T Ingolia; Sina Ghaemmaghami; John R S Newman; Jonathan S Weissman
Journal:  Science       Date:  2009-02-12       Impact factor: 47.728

9.  Proteome-wide cellular protein concentrations of the human pathogen Leptospira interrogans.

Authors:  Johan Malmström; Martin Beck; Alexander Schmidt; Vinzenz Lange; Eric W Deutsch; Ruedi Aebersold
Journal:  Nature       Date:  2009-07-15       Impact factor: 49.962

Review 10.  Proteomics/peptidomics tools to find CSF biomarkers for neurodegenerative diseases.

Authors:  Ann Westman-Brinkmalm; Ulla Ruetschi; Erik Portelius; Ulf Andreasson; Gunnar Brinkmalm; Gosta Karlsson; Sara Hansson; Henrik Zetterberg; Kaj Blennow
Journal:  Front Biosci (Landmark Ed)       Date:  2009-01-01
View more
  152 in total

1.  The use of chromium(III) to supercharge peptides by protonation at low basicity sites.

Authors:  Changgeng Feng; Juliette J Commodore; Carolyn J Cassady
Journal:  J Am Soc Mass Spectrom       Date:  2014-11-14       Impact factor: 3.109

2.  msCompare: a framework for quantitative analysis of label-free LC-MS data for comparative candidate biomarker studies.

Authors:  Berend Hoekman; Rainer Breitling; Frank Suits; Rainer Bischoff; Peter Horvatovich
Journal:  Mol Cell Proteomics       Date:  2012-02-07       Impact factor: 5.911

Review 3.  The spectra count label-free quantitation in cancer proteomics.

Authors:  Weidong Zhou; Lance A Liotta; Emanuel F Petricoin
Journal:  Cancer Genomics Proteomics       Date:  2012 May-Jun       Impact factor: 4.069

4.  Assessing the Interplay between the Physicochemical Parameters of Ion-Pairing Reagents and the Analyte Sequence on the Electrospray Desorption Process for Oligonucleotides.

Authors:  Babak Basiri; Mandi M Murph; Michael G Bartlett
Journal:  J Am Soc Mass Spectrom       Date:  2017-04-12       Impact factor: 3.109

5.  Instant spectral assignment for advanced decision tree-driven mass spectrometry.

Authors:  Derek J Bailey; Christopher M Rose; Graeme C McAlister; Justin Brumbaugh; Pengzhi Yu; Craig D Wenger; Michael S Westphall; James A Thomson; Joshua J Coon
Journal:  Proc Natl Acad Sci U S A       Date:  2012-05-14       Impact factor: 11.205

Review 6.  Peptide identification by tandem mass spectrometry with alternate fragmentation modes.

Authors:  Adrian Guthals; Nuno Bandeira
Journal:  Mol Cell Proteomics       Date:  2012-05-17       Impact factor: 5.911

7.  Maximizing peptide identification events in proteomic workflows using data-dependent acquisition (DDA).

Authors:  Nicholas W Bateman; Scott P Goulding; Nicholas J Shulman; Avinash K Gadok; Karen K Szumlinski; Michael J MacCoss; Christine C Wu
Journal:  Mol Cell Proteomics       Date:  2013-07-02       Impact factor: 5.911

Review 8.  Integrative Analysis of Multi-omics Data for Discovery and Functional Studies of Complex Human Diseases.

Authors:  Yan V Sun; Yi-Juan Hu
Journal:  Adv Genet       Date:  2016-01-25       Impact factor: 1.944

Review 9.  Unleashing the power of proteomics to develop blood-based cancer markers.

Authors:  Ayumu Taguchi; Samir M Hanash
Journal:  Clin Chem       Date:  2012-10-24       Impact factor: 8.327

10.  Sources of technical variability in quantitative LC-MS proteomics: human brain tissue sample analysis.

Authors:  Paul D Piehowski; Vladislav A Petyuk; Daniel J Orton; Fang Xie; Ronald J Moore; Manuel Ramirez-Restrepo; Anzhelika Engel; Andrew P Lieberman; Roger L Albin; David G Camp; Richard D Smith; Amanda J Myers
Journal:  J Proteome Res       Date:  2013-04-10       Impact factor: 4.466
View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.