Literature DB >> 19932103

The T box mechanism: tRNA as a regulatory molecule.

Nicholas J Green1, Frank J Grundy, Tina M Henkin.   

Abstract

The T box mechanism is widely used in Gram-positive bacteria to regulate expression of aminoacyl-tRNA synthetase genes and genes involved in amino acid biosynthesis and uptake. Binding of a specific uncharged tRNA to a riboswitch element in the nascent transcript causes a structural change in the transcript that promotes expression of the downstream coding sequence. In most cases, this occurs by stabilization of an antiterminator element that competes with formation of a terminator helix. Specific tRNA recognition by the nascent transcript results in increased expression of genes important for tRNA aminoacylation in response to decreased pools of charged tRNA.

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Year:  2010        PMID: 19932103      PMCID: PMC2794906          DOI: 10.1016/j.febslet.2009.11.056

Source DB:  PubMed          Journal:  FEBS Lett        ISSN: 0014-5793            Impact factor:   4.124


  45 in total

1.  Processing of the leader mRNA plays a major role in the induction of thrS expression following threonine starvation in Bacillus subtilis.

Authors:  C Condon; H Putzer; M Grunberg-Manago
Journal:  Proc Natl Acad Sci U S A       Date:  1996-07-09       Impact factor: 11.205

2.  Monitoring uncharged tRNA during transcription of the Bacillus subtilis glyQS gene.

Authors:  Frank J Grundy; Mary R Yousef; Tina M Henkin
Journal:  J Mol Biol       Date:  2004-12-15       Impact factor: 5.469

3.  Analysis of cis-acting sequence and structural elements required for antitermination of the Bacillus subtilis tyrS gene.

Authors:  S M Rollins; F J Grundy; T M Henkin
Journal:  Mol Microbiol       Date:  1997-07       Impact factor: 3.501

4.  Regulation of expression of the Lactococcus lactis histidine operon.

Authors:  C Delorme; S D Ehrlich; P Renault
Journal:  J Bacteriol       Date:  1999-04       Impact factor: 3.490

5.  A CUC triplet confers leucine-dependent regulation of the Bacillus subtilis ilv-leu operon.

Authors:  P T Marta; R D Ladner; J A Grandoni
Journal:  J Bacteriol       Date:  1996-04       Impact factor: 3.490

6.  Specificity of tRNA-mRNA interactions in Bacillus subtilis tyrS antitermination.

Authors:  F J Grundy; S E Hodil; S M Rollins; T M Henkin
Journal:  J Bacteriol       Date:  1997-04       Impact factor: 3.490

7.  Transcription of the trp operon in Lactococcus lactis is controlled by antitermination in the leader region.

Authors:  HéléeGne Frenkiel; Jacek Bardowski; S Dusko Ehrlich; Alain Chopin
Journal:  Microbiology (Reading)       Date:  1998-08       Impact factor: 2.777

8.  In vitro and in vivo secondary structure probing of the thrS leader in Bacillus subtilis.

Authors:  D Luo; C Condon; M Grunberg-Manago; H Putzer
Journal:  Nucleic Acids Res       Date:  1998-12-01       Impact factor: 16.971

9.  tRNATrp as a key element of antitermination in the Lactococcus lactis trp operon.

Authors:  M van de Guchte; D S Ehrlich; A Chopin
Journal:  Mol Microbiol       Date:  1998-07       Impact factor: 3.501

10.  Ribonucleases J1 and J2: two novel endoribonucleases in B.subtilis with functional homology to E.coli RNase E.

Authors:  Sergine Even; Olivier Pellegrini; Lena Zig; Valerie Labas; Joelle Vinh; Dominique Bréchemmier-Baey; Harald Putzer
Journal:  Nucleic Acids Res       Date:  2005-04-14       Impact factor: 16.971

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  74 in total

Review 1.  tRNA biology charges to the front.

Authors:  Eric M Phizicky; Anita K Hopper
Journal:  Genes Dev       Date:  2010-09-01       Impact factor: 11.361

2.  Codon-Anticodon Recognition in the Bacillus subtilis glyQS T Box Riboswitch: RNA-DEPENDENT CODON SELECTION OUTSIDE THE RIBOSOME.

Authors:  Enrico Caserta; Liang-Chun Liu; Frank J Grundy; Tina M Henkin
Journal:  J Biol Chem       Date:  2015-07-30       Impact factor: 5.157

Review 3.  Every little piece counts: the many faces of tRNA transcripts.

Authors:  David Lalaouna; Marie-Claude Carrier; Eric Massé
Journal:  Transcription       Date:  2015

4.  Rifampin Resistance rpoB Alleles or Multicopy Thioredoxin/Thioredoxin Reductase Suppresses the Lethality of Disruption of the Global Stress Regulator spx in Staphylococcus aureus.

Authors:  Maite Villanueva; Ambre Jousselin; Kristoffer T Baek; Julien Prados; Diego O Andrey; Adriana Renzoni; Hanne Ingmer; Dorte Frees; William L Kelley
Journal:  J Bacteriol       Date:  2016-09-09       Impact factor: 3.490

5.  Anisotropy studies of tRNA-T box antiterminator RNA complex in the presence of 1,4-disubstituted 1,2,3-triazoles.

Authors:  S Zhou; G Acquaah-Harrison; S C Bergmeier; J V Hines
Journal:  Bioorg Med Chem Lett       Date:  2011-09-29       Impact factor: 2.823

Review 6.  Sequence, structure, and stacking: specifics of tRNA anchoring to the T box riboswitch.

Authors:  Jason C Grigg; Ailong Ke
Journal:  RNA Biol       Date:  2013-11-04       Impact factor: 4.652

Review 7.  Slicing tRNAs to boost functional ncRNA diversity.

Authors:  Jennifer Gebetsberger; Norbert Polacek
Journal:  RNA Biol       Date:  2013-11-21       Impact factor: 4.652

8.  Synthesis and stereospecificity of 4,5-disubstituted oxazolidinone ligands binding to T-box riboswitch RNA.

Authors:  Crina M Orac; Shu Zhou; John A Means; David Boehm; Stephen C Bergmeier; Jennifer V Hines
Journal:  J Med Chem       Date:  2011-08-31       Impact factor: 7.446

Review 9.  The T box riboswitch: A novel regulatory RNA that utilizes tRNA as its ligand.

Authors:  Tina M Henkin
Journal:  Biochim Biophys Acta       Date:  2014-05-09

10.  Structural determinants for geometry and information decoding of tRNA by T box leader RNA.

Authors:  Jason C Grigg; Ailong Ke
Journal:  Structure       Date:  2013-10-03       Impact factor: 5.006

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