Literature DB >> 24816551

The T box riboswitch: A novel regulatory RNA that utilizes tRNA as its ligand.

Tina M Henkin1.   

Abstract

The T box riboswitch is a cis-acting regulatory RNA that controls expression of amino acid-related genes in response to the aminoacylation state of a specific tRNA. Multiple genes in the same organism can utilize this mechanism, with each gene responding independently to its cognate tRNA. The uncharged tRNA interacts directly with the regulatory RNA element, and this interaction promotes readthrough of an intrinsic transcriptional termination site upstream of the regulated coding sequence. A second class of T box elements uses a similar tRNA-dependent response to regulate translation initiation. This review will describe the current state of our knowledge about this regulatory system. This article is part of a Special Issue entitled: Riboswitches.
Copyright © 2014 Elsevier B.V. All rights reserved.

Entities:  

Keywords:  Gene regulation; RNA structure; Riboswitch; Transcription attenuation; tRNA

Year:  2014        PMID: 24816551      PMCID: PMC4958404          DOI: 10.1016/j.bbagrm.2014.04.022

Source DB:  PubMed          Journal:  Biochim Biophys Acta        ISSN: 0006-3002


  45 in total

1.  Kinetic analysis of tRNA-directed transcription antitermination of the Bacillus subtilis glyQS gene in vitro.

Authors:  Frank J Grundy; Tina M Henkin
Journal:  J Bacteriol       Date:  2004-08       Impact factor: 3.490

2.  A Bacillus subtilis operon containing genes of unknown function senses tRNATrp charging and regulates expression of the genes of tryptophan biosynthesis.

Authors:  J P Sarsero; E Merino; C Yanofsky
Journal:  Proc Natl Acad Sci U S A       Date:  2000-03-14       Impact factor: 11.205

3.  Regulation of expression of the Lactococcus lactis histidine operon.

Authors:  C Delorme; S D Ehrlich; P Renault
Journal:  J Bacteriol       Date:  1999-04       Impact factor: 3.490

4.  Regulation of tyrosyl-transfer ribonucleic acid synthetase in Bacillus subtilis.

Authors:  B A Dale; E W Nester
Journal:  J Bacteriol       Date:  1971-10       Impact factor: 3.490

5.  Specificity of tRNA-mRNA interactions in Bacillus subtilis tyrS antitermination.

Authors:  F J Grundy; S E Hodil; S M Rollins; T M Henkin
Journal:  J Bacteriol       Date:  1997-04       Impact factor: 3.490

6.  Structure-activity studies of oxazolidinone analogs as RNA-binding agents.

Authors:  John Means; Steven Katz; Abhijit Nayek; Rajaneesh Anupam; Jennifer V Hines; Stephen C Bergmeier
Journal:  Bioorg Med Chem Lett       Date:  2006-04-05       Impact factor: 2.823

7.  tRNA-mediated transcription antitermination in vitro: codon-anticodon pairing independent of the ribosome.

Authors:  Frank J Grundy; Wade C Winkler; Tina M Henkin
Journal:  Proc Natl Acad Sci U S A       Date:  2002-08-06       Impact factor: 11.205

8.  Transcription of the trp operon in Lactococcus lactis is controlled by antitermination in the leader region.

Authors:  HéléeGne Frenkiel; Jacek Bardowski; S Dusko Ehrlich; Alain Chopin
Journal:  Microbiology (Reading)       Date:  1998-08       Impact factor: 2.777

9.  Transfer RNA-mediated antitermination in vitro.

Authors:  Harald Putzer; Ciarán Condon; Dominique Brechemier-Baey; Renata Brito; Marianne Grunberg-Manago
Journal:  Nucleic Acids Res       Date:  2002-07-15       Impact factor: 16.971

10.  tRNA as a positive regulator of transcription antitermination in B. subtilis.

Authors:  F J Grundy; T M Henkin
Journal:  Cell       Date:  1993-08-13       Impact factor: 41.582

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  25 in total

1.  T box riboswitches in Actinobacteria: translational regulation via novel tRNA interactions.

Authors:  Anna V Sherwood; Frank J Grundy; Tina M Henkin
Journal:  Proc Natl Acad Sci U S A       Date:  2015-01-12       Impact factor: 11.205

Review 2.  Regulation of Bacterial Gene Expression by Transcription Attenuation.

Authors:  Charles L Turnbough
Journal:  Microbiol Mol Biol Rev       Date:  2019-07-03       Impact factor: 11.056

3.  Redefining the Small Regulatory RNA Transcriptome in Streptococcus pneumoniae Serotype 2 Strain D39.

Authors:  Dhriti Sinha; Kurt Zimmer; Todd A Cameron; Douglas B Rusch; Malcolm E Winkler; Nicholas R De Lay
Journal:  J Bacteriol       Date:  2019-06-21       Impact factor: 3.490

Review 4.  Catalytic DNA: Scope, Applications, and Biochemistry of Deoxyribozymes.

Authors:  Scott K Silverman
Journal:  Trends Biochem Sci       Date:  2016-05-25       Impact factor: 13.807

5.  RNA drug discovery: Conformational restriction enhances specific modulation of the T-box riboswitch function.

Authors:  Ian Armstrong; Ali H Aldhumani; Jia L Schopis; Fang Fang; Eric Parsons; Chunxi Zeng; Md Ismail Hossain; Stephen C Bergmeier; Jennifer V Hines
Journal:  Bioorg Med Chem       Date:  2020-08-06       Impact factor: 3.641

6.  Noncanonical Roles of tRNAs: tRNA Fragments and Beyond.

Authors:  Zhangli Su; Briana Wilson; Pankaj Kumar; Anindya Dutta
Journal:  Annu Rev Genet       Date:  2020-08-25       Impact factor: 16.830

Review 7.  An evolving tale of two interacting RNAs-themes and variations of the T-box riboswitch mechanism.

Authors:  Krishna C Suddala; Jinwei Zhang
Journal:  IUBMB Life       Date:  2019-06-17       Impact factor: 3.885

Review 8.  Long-Range Interactions in Riboswitch Control of Gene Expression.

Authors:  Christopher P Jones; Adrian R Ferré-D'Amaré
Journal:  Annu Rev Biophys       Date:  2017-03-30       Impact factor: 12.981

9.  Factors that influence T box riboswitch efficacy and tRNA affinity.

Authors:  C Zeng; S Zhou; S C Bergmeier; J V Hines
Journal:  Bioorg Med Chem       Date:  2015-07-16       Impact factor: 3.641

10.  Identification of Spermidine Binding Site in T-box Riboswitch Antiterminator RNA.

Authors:  Jia Liu; Chunxi Zeng; Vivian Hogan; Shu Zhou; Md Masud Monwar; Jennifer V Hines
Journal:  Chem Biol Drug Des       Date:  2015-10-05       Impact factor: 2.817

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