Literature DB >> 19931532

Cellular dynamics of tRNAs and their genes.

Anita K Hopper1, Dave A Pai, David R Engelke.   

Abstract

This discussion focuses on the cellular dynamics of tRNA transcription, processing, and turnover. Early tRNA biosynthesis steps are shared among most tRNAs, while later ones are often individualized for specific tRNAs. In yeast, tRNA transcription and early processing occur coordinately in the nucleolus, requiring topological arrangement of approximately 300 tRNA genes and early processing enzymes to this site; later processing events occur in the nucleoplasm or cytoplasm. tRNA nuclear export requires multiple exporters which function in parallel and the export process is coupled with other cellular events. Nuclear-cytoplasmic tRNA subcellular movement is not unidirectional as a retrograde pathway delivers mature cytoplasmic tRNAs to the nucleus. Despite the long half-lives, there are multiple pathways to turnover damaged tRNAs or normal tRNAs upon cellular stress.

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Year:  2010        PMID: 19931532      PMCID: PMC2818515          DOI: 10.1016/j.febslet.2009.11.053

Source DB:  PubMed          Journal:  FEBS Lett        ISSN: 0014-5793            Impact factor:   4.124


  92 in total

1.  The yeast tRNA splicing endonuclease: a tetrameric enzyme with two active site subunits homologous to the archaeal tRNA endonucleases.

Authors:  C R Trotta; F Miao; E A Arn; S W Stevens; C K Ho; R Rauhut; J N Abelson
Journal:  Cell       Date:  1997-06-13       Impact factor: 41.582

2.  Location of N2,N2-dimethylguanosine-specific tRNA methyltransferase.

Authors:  A M Rose; H G Belford; W C Shen; C L Greer; A K Hopper; N C Martin
Journal:  Biochimie       Date:  1995       Impact factor: 4.079

Review 3.  How single genes provide tRNA processing enzymes to mitochondria, nuclei and the cytosol.

Authors:  N C Martin; A K Hopper
Journal:  Biochimie       Date:  1994       Impact factor: 4.079

4.  An NAD derivative produced during transfer RNA splicing: ADP-ribose 1"-2" cyclic phosphate.

Authors:  G M Culver; S M McCraith; M Zillmann; R Kierzek; N Michaud; R D LaReau; D H Turner; E M Phizicky
Journal:  Science       Date:  1993-07-09       Impact factor: 47.728

5.  Intranuclear location of the tRNA splicing enzymes.

Authors:  E M De Robertis; P Black; K Nishikura
Journal:  Cell       Date:  1981-01       Impact factor: 41.582

6.  Yeast tRNA ligase mutants are nonviable and accumulate tRNA splicing intermediates.

Authors:  E M Phizicky; S A Consaul; K W Nehrke; J Abelson
Journal:  J Biol Chem       Date:  1992-03-05       Impact factor: 5.157

7.  PTA1, an essential gene of Saccharomyces cerevisiae affecting pre-tRNA processing.

Authors:  J P O'Connor; C L Peebles
Journal:  Mol Cell Biol       Date:  1992-09       Impact factor: 4.272

8.  Nuclear domains of the RNA subunit of RNase P.

Authors:  M R Jacobson; L G Cao; K Taneja; R H Singer; Y L Wang; T Pederson
Journal:  J Cell Sci       Date:  1997-04       Impact factor: 5.285

9.  The subnuclear localization of tRNA ligase in yeast.

Authors:  M W Clark; J Abelson
Journal:  J Cell Biol       Date:  1987-10       Impact factor: 10.539

10.  A perinucleolar compartment contains several RNA polymerase III transcripts as well as the polypyrimidine tract-binding protein, hnRNP I.

Authors:  A G Matera; M R Frey; K Margelot; S L Wolin
Journal:  J Cell Biol       Date:  1995-06       Impact factor: 10.539

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  44 in total

1.  The zipcode-binding protein ZBP1 influences the subcellular location of the Ro 60-kDa autoantigen and the noncoding Y3 RNA.

Authors:  Soyeong Sim; Jie Yao; David E Weinberg; Sherry Niessen; John R Yates; Sandra L Wolin
Journal:  RNA       Date:  2011-11-23       Impact factor: 4.942

2.  Beyond tRNA cleavage: novel essential function for yeast tRNA splicing endonuclease unrelated to tRNA processing.

Authors:  Nripesh Dhungel; Anita K Hopper
Journal:  Genes Dev       Date:  2012-03-01       Impact factor: 11.361

Review 3.  tRNA biology charges to the front.

Authors:  Eric M Phizicky; Anita K Hopper
Journal:  Genes Dev       Date:  2010-09-01       Impact factor: 11.361

Review 4.  Regulatory RNAs derived from transfer RNA?

Authors:  Thoru Pederson
Journal:  RNA       Date:  2010-08-18       Impact factor: 4.942

5.  A Member of the Arabidopsis Mitochondrial Transcription Termination Factor Family Is Required for Maturation of Chloroplast Transfer RNAIle(GAU).

Authors:  Isidora Romani; Nikolay Manavski; Arianna Morosetti; Luca Tadini; Swetlana Maier; Kristina Kühn; Hannes Ruwe; Christian Schmitz-Linneweber; Gerhard Wanner; Dario Leister; Tatjana Kleine
Journal:  Plant Physiol       Date:  2015-07-07       Impact factor: 8.340

Review 6.  A census of human RNA-binding proteins.

Authors:  Stefanie Gerstberger; Markus Hafner; Thomas Tuschl
Journal:  Nat Rev Genet       Date:  2014-11-04       Impact factor: 53.242

Review 7.  Comparative overview of RNA polymerase II and III transcription cycles, with focus on RNA polymerase III termination and reinitiation.

Authors:  Aneeshkumar G Arimbasseri; Keshab Rijal; Richard J Maraia
Journal:  Transcription       Date:  2014

8.  Biophysical analysis of Arabidopsis protein-only RNase P alone and in complex with tRNA provides a refined model of tRNA binding.

Authors:  Franziska Pinker; Cédric Schelcher; Pablo Fernandez-Millan; Anthony Gobert; Catherine Birck; Aurélien Thureau; Pierre Roblin; Philippe Giegé; Claude Sauter
Journal:  J Biol Chem       Date:  2017-07-10       Impact factor: 5.157

Review 9.  tRNA and cytochrome c in cell death and beyond.

Authors:  Yide Mei; Jeongsik Yong; Aaron Stonestrom; Xiaolu Yang
Journal:  Cell Cycle       Date:  2010-08-07       Impact factor: 4.534

Review 10.  Pathways to disease from natural variations in human cytoplasmic tRNAs.

Authors:  Jeremy T Lant; Matthew D Berg; Ilka U Heinemann; Christopher J Brandl; Patrick O'Donoghue
Journal:  J Biol Chem       Date:  2019-01-14       Impact factor: 5.157

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