Literature DB >> 25764110

Comparative overview of RNA polymerase II and III transcription cycles, with focus on RNA polymerase III termination and reinitiation.

Aneeshkumar G Arimbasseri1, Keshab Rijal, Richard J Maraia.   

Abstract

In eukaryotes, RNA polymerase (RNAP) III transcribes hundreds of genes for tRNAs and 5S rRNA, among others, which share similar promoters and stable transcription initiation complexes (TIC), which support rapid RNAP III recycling. In contrast, RNAP II transcribes a large number of genes with highly variable promoters and interacting factors, which exert fine regulatory control over TIC lability and modifications of RNAP II at different transitional points in the transcription cycle. We review data that illustrate a relatively smooth continuity of RNAP III initiation-elongation-termination and reinitiation toward its function to produce high levels of tRNAs and other RNAs that support growth and development.

Keywords:  BREd; BREu; DPE; Inr; MTE; Motif 10 element; RNA polymerase III; TAF; TFIID-associated factors; TFIIIB; TFIIIC; downstream B recognition element; downstream promoter element; facilitated recycling; facilitated reinitiation; initiator element; polymerase recycling; term; terminator; transcription reinitiation; upstream B recognition element

Mesh:

Substances:

Year:  2014        PMID: 25764110      PMCID: PMC4214234          DOI: 10.4161/trns.27369

Source DB:  PubMed          Journal:  Transcription        ISSN: 2154-1272


  105 in total

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Journal:  Bioessays       Date:  2000-04       Impact factor: 4.345

2.  Nascent RNA structure modulates the transcriptional dynamics of RNA polymerases.

Authors:  Bradley Zamft; Lacramioara Bintu; Toyotaka Ishibashi; Carlos Bustamante
Journal:  Proc Natl Acad Sci U S A       Date:  2012-05-21       Impact factor: 11.205

3.  DNA topoisomerase I and PC4 can interact with human TFIIIC to promote both accurate termination and transcription reinitiation by RNA polymerase III.

Authors:  Z Wang; R G Roeder
Journal:  Mol Cell       Date:  1998-04       Impact factor: 17.970

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Authors:  N Komissarova; M Kashlev
Journal:  Proc Natl Acad Sci U S A       Date:  1997-03-04       Impact factor: 11.205

5.  Interaction between a complex of RNA polymerase III subunits and the 70-kDa component of transcription factor IIIB.

Authors:  M Werner; N Chaussivert; I M Willis; A Sentenac
Journal:  J Biol Chem       Date:  1993-10-05       Impact factor: 5.157

Review 6.  Regulation of pol III transcription by nutrient and stress signaling pathways.

Authors:  Robyn D Moir; Ian M Willis
Journal:  Biochim Biophys Acta       Date:  2012-11-16

7.  Architecture of a yeast U6 RNA gene promoter.

Authors:  J B Eschenlauer; M W Kaiser; V L Gerlach; D A Brow
Journal:  Mol Cell Biol       Date:  1993-05       Impact factor: 4.272

8.  Functional domains of transcription factor TFIIB.

Authors:  S Buratowski; H Zhou
Journal:  Proc Natl Acad Sci U S A       Date:  1993-06-15       Impact factor: 11.205

9.  Architecture of the RNA polymerase II preinitiation complex and mechanism of ATP-dependent promoter opening.

Authors:  Sebastian Grünberg; Linda Warfield; Steven Hahn
Journal:  Nat Struct Mol Biol       Date:  2012-07-01       Impact factor: 15.369

10.  Genome-wide RNA polymerase II profiles and RNA accumulation reveal kinetics of transcription and associated epigenetic changes during diurnal cycles.

Authors:  Gwendal Le Martelot; Donatella Canella; Laura Symul; Eugenia Migliavacca; Federica Gilardi; Robin Liechti; Olivier Martin; Keith Harshman; Mauro Delorenzi; Béatrice Desvergne; Winship Herr; Bart Deplancke; Ueli Schibler; Jacques Rougemont; Nicolas Guex; Nouria Hernandez; Felix Naef
Journal:  PLoS Biol       Date:  2012-11-27       Impact factor: 8.029

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  37 in total

1.  Loss of Function of an RNA Polymerase III Subunit Leads to Impaired Maize Kernel Development.

Authors:  Hailiang Zhao; Yao Qin; Ziyi Xiao; Qi Li; Ning Yang; Zhenyuan Pan; Dianming Gong; Qin Sun; Fang Yang; Zuxin Zhang; Yongrui Wu; Cao Xu; Fazhan Qiu
Journal:  Plant Physiol       Date:  2020-06-26       Impact factor: 8.340

2.  A high density of cis-information terminates RNA Polymerase III on a 2-rail track.

Authors:  Aneeshkumar G Arimbasseri; Richard J Maraia
Journal:  RNA Biol       Date:  2015-12-04       Impact factor: 4.652

3.  Biochemical analysis of transcription termination by RNA polymerase III from yeast Saccharomyces cerevisiae.

Authors:  Aneeshkumar G Arimbasseri; Richard J Maraia
Journal:  Methods Mol Biol       Date:  2015

Review 4.  Ubiquitous transcription factors display structural plasticity and diverse functions: NusG proteins - Shifting shapes and paradigms.

Authors:  Monali NandyMazumdar; Irina Artsimovitch
Journal:  Bioessays       Date:  2015-01-15       Impact factor: 4.345

5.  Determinants of Replication-Fork Pausing at tRNA Genes in Saccharomyces cerevisiae.

Authors:  Rani Yeung; Duncan J Smith
Journal:  Genetics       Date:  2020-02-18       Impact factor: 4.562

6.  Quantification of the effect of site-specific histone acetylation on chromatin transcription rate.

Authors:  Masatoshi Wakamori; Kohki Okabe; Kiyoe Ura; Takashi Funatsu; Masahiro Takinoue; Takashi Umehara
Journal:  Nucleic Acids Res       Date:  2020-12-16       Impact factor: 16.971

Review 7.  A methods review on use of nonsense suppression to study 3' end formation and other aspects of tRNA biogenesis.

Authors:  Keshab Rijal; Richard J Maraia; Aneeshkumar G Arimbasseri
Journal:  Gene       Date:  2014-11-18       Impact factor: 3.688

8.  Gene-Specific Control of tRNA Expression by RNA Polymerase II.

Authors:  Alan Gerber; Keiichi Ito; Chi-Shuen Chu; Robert G Roeder
Journal:  Mol Cell       Date:  2020-04-15       Impact factor: 17.970

Review 9.  RNA Polymerase III Advances: Structural and tRNA Functional Views.

Authors:  Aneeshkumar G Arimbasseri; Richard J Maraia
Journal:  Trends Biochem Sci       Date:  2016-04-08       Impact factor: 13.807

10.  Transcription. Comment on "Mechanism of eukaryotic RNA polymerase III transcription termination".

Authors:  Aneeshkumar G Arimbasseri; George A Kassavetis; Richard J Maraia
Journal:  Science       Date:  2014-07-31       Impact factor: 47.728

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