Literature DB >> 19929828

Hydrophobicity--shake flasks, protein folding and drug discovery.

Aurijit Sarkar1, Glen E Kellogg.   

Abstract

Hydrophobic interactions are some of the most important interactions in nature. They are the primary driving force in a number of phenomena. This is mostly an entropic effect and can account for a number of biophysical events such as protein-protein or protein-ligand binding that are of immense importance in drug design. The earliest studies on this phenomenon can be dated back to the end of the 19(th) century when Meyer and Overton independently correlated the hydrophobic nature of gases to their anesthetic potency. Since then, significant progress has been made in this realm of science. This review briefly traces the history of hydrophobicity research along with the theoretical estimation of partition coefficients. Finally, the application of hydrophobicity estimation methods in the field of drug design and protein folding is discussed.

Entities:  

Mesh:

Substances:

Year:  2010        PMID: 19929828      PMCID: PMC2851852          DOI: 10.2174/156802610790232233

Source DB:  PubMed          Journal:  Curr Top Med Chem        ISSN: 1568-0266            Impact factor:   3.295


  102 in total

1.  Partition coefficients and the structure-activity relationship of the anesthetic gases.

Authors:  C Hansch; A Vittoria; C Silipo; P Y Jow
Journal:  J Med Chem       Date:  1975-06       Impact factor: 7.446

Review 2.  Force fields for protein simulations.

Authors:  Jay W Ponder; David A Case
Journal:  Adv Protein Chem       Date:  2003

3.  A neural network based prediction of octanol-water partition coefficients using atomic5 fragmental descriptors.

Authors:  László Molnár; György M Keseru; Akos Papp; Zsolt Gulyás; Ferenc Darvas
Journal:  Bioorg Med Chem Lett       Date:  2004-02-23       Impact factor: 2.823

4.  Comparative molecular field analysis (CoMFA) and docking studies of non-nucleoside HIV-1 RT inhibitors (NNIs).

Authors:  M L Barreca; A Carotti; A Carrieri; A Chimirri; A M Monforte; M P Calace; A Rao
Journal:  Bioorg Med Chem       Date:  1999-11       Impact factor: 3.641

5.  The evolution of synthetic oral drug properties.

Authors:  John R Proudfoot
Journal:  Bioorg Med Chem Lett       Date:  2005-02-15       Impact factor: 2.823

6.  SVM approach for predicting LogP.

Authors:  Quan Liao; Jianhua Yao; Shengang Yuan
Journal:  Mol Divers       Date:  2006-09-22       Impact factor: 2.943

7.  Surface tension of amino acid solutions: a hydrophobicity scale of the amino acid residues.

Authors:  H B Bull; K Breese
Journal:  Arch Biochem Biophys       Date:  1974-04-02       Impact factor: 4.013

8.  A molecular orbital description of the partitioning of aromatic compounds between polar and nonpolar phases.

Authors:  K S Rogers; A Cammarata
Journal:  Biochim Biophys Acta       Date:  1969-10-14

9.  Water structure of a hydrophobic protein at atomic resolution: Pentagon rings of water molecules in crystals of crambin.

Authors:  M M Teeter
Journal:  Proc Natl Acad Sci U S A       Date:  1984-10       Impact factor: 11.205

10.  Structural determinants of high-affinity binding of ryanoids to the vertebrate skeletal muscle ryanodine receptor: a comparative molecular field analysis.

Authors:  W Welch; S Ahmad; J A Airey; K Gerzon; R A Humerickhouse; H R Besch; L Ruest; P Deslongchamps; J L Sutko
Journal:  Biochemistry       Date:  1994-05-24       Impact factor: 3.162

View more
  26 in total

1.  Premature activation of the paramyxovirus fusion protein before target cell attachment with corruption of the viral fusion machinery.

Authors:  Shohreh F Farzan; Laura M Palermo; Christine C Yokoyama; Gianmarco Orefice; Micaela Fornabaio; Aurijit Sarkar; Glen E Kellogg; Olga Greengard; Matteo Porotto; Anne Moscona
Journal:  J Biol Chem       Date:  2011-07-28       Impact factor: 5.157

2.  The influence of hydrogen bonding on partition coefficients.

Authors:  Nádia Melo Borges; Peter W Kenny; Carlos A Montanari; Igor M Prokopczyk; Jean F R Ribeiro; Josmar R Rocha; Geraldo Rodrigues Sartori
Journal:  J Comput Aided Mol Des       Date:  2017-01-04       Impact factor: 3.686

3.  Design, Optimization, and Study of Small Molecules That Target Tau Pre-mRNA and Affect Splicing.

Authors:  Jonathan L Chen; Peiyuan Zhang; Masahito Abe; Haruo Aikawa; Liying Zhang; Alexander J Frank; Timothy Zembryski; Christopher Hubbs; HaJeung Park; Jane Withka; Claire Steppan; Lucy Rogers; Shawn Cabral; Martin Pettersson; Travis T Wager; Matthew A Fountain; Gavin Rumbaugh; Jessica L Childs-Disney; Matthew D Disney
Journal:  J Am Chem Soc       Date:  2020-05-04       Impact factor: 15.419

4.  Molecular basis of E. coli L-threonine aldolase catalytic inactivation at low pH.

Authors:  Soumya G Remesh; Mohini S Ghatge; Mostafa H Ahmed; Faik N Musayev; Amit Gandhi; Nadia Chowdhury; Martino L di Salvo; Glen E Kellogg; Roberto Contestabile; Verne Schirch; Martin K Safo
Journal:  Biochim Biophys Acta       Date:  2015-01-02

5.  Design, synthesis, and biological evaluation of substrate-competitive inhibitors of C-terminal Binding Protein (CtBP).

Authors:  Sudha Korwar; Benjamin L Morris; Hardik I Parikh; Robert A Coover; Tyler W Doughty; Ian M Love; Brendan J Hilbert; William E Royer; Glen E Kellogg; Steven R Grossman; Keith C Ellis
Journal:  Bioorg Med Chem       Date:  2016-04-20       Impact factor: 3.641

6.  Understanding molecular interactions between scavenger receptor A and its natural product inhibitors through molecular modeling studies.

Authors:  Piyusha P Pagare; Saheem A Zaidi; Xiaomei Zhang; Xia Li; Xiaofei Yu; Xiang-Yang Wang; Yan Zhang
Journal:  J Mol Graph Model       Date:  2017-08-16       Impact factor: 2.518

7.  Ortho group activation of a bromopyrrole ester in Suzuki-Miyaura cross-coupling reactions: Application to the synthesis of new microtubule depolymerizing agents with potent cytotoxic activities.

Authors:  John T Gupton; Scott Yeudall; Nakul Telang; Megan Hoerrner; Ellis Huff; Evan Crawford; Katie Lounsbury; Michael Kimmel; William Curry; Andrew Harrison; Wen Juekun; Alex Shimozono; Joe Ortolani; Kristin Lescalleet; Jon Patteson; Veronica Moore-Stoll; Cristina C Rohena; Susan L Mooberry; Ahmad J Obaidullah; Glen E Kellogg; James A Sikorski
Journal:  Bioorg Med Chem       Date:  2017-04-11       Impact factor: 3.641

8.  Predicting the molecular interactions of CRIP1a-cannabinoid 1 receptor with integrated molecular modeling approaches.

Authors:  Mostafa H Ahmed; Glen E Kellogg; Dana E Selley; Martin K Safo; Yan Zhang
Journal:  Bioorg Med Chem Lett       Date:  2014-01-08       Impact factor: 2.823

9.  Biological Characterization of an Improved Pyrrole-Based Colchicine Site Agent Identified through Structure-Based Design.

Authors:  Cristina C Rohena; Nakul S Telang; Chenxiao Da; April L Risinger; James A Sikorski; Glen E Kellogg; John T Gupton; Susan L Mooberry
Journal:  Mol Pharmacol       Date:  2015-12-11       Impact factor: 4.436

10.  Designing allosteric regulators of thrombin. Exosite 2 features multiple subsites that can be targeted by sulfated small molecules for inducing inhibition.

Authors:  Preetpal Singh Sidhu; May H Abdel Aziz; Aurijit Sarkar; Akul Y Mehta; Qibing Zhou; Umesh R Desai
Journal:  J Med Chem       Date:  2013-06-13       Impact factor: 7.446

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.