Literature DB >> 19915535

An artificial di-iron oxo-protein with phenol oxidase activity.

Marina Faiella1, Concetta Andreozzi, Rafael Torres Martin de Rosales, Vincenzo Pavone, Ornella Maglio, Flavia Nastri, William F DeGrado, Angela Lombardi.   

Abstract

Here we report the de novo design and NMR structure of a four-helical bundle di-iron protein with phenol oxidase activity. The introduction of the cofactor-binding and phenol-binding sites required the incorporation of residues that were detrimental to the free energy of folding of the protein. Sufficient stability was, however, obtained by optimizing the sequence of a loop distant from the active site.

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Year:  2009        PMID: 19915535      PMCID: PMC3808167          DOI: 10.1038/nchembio.257

Source DB:  PubMed          Journal:  Nat Chem Biol        ISSN: 1552-4450            Impact factor:   15.040


  22 in total

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2.  Intelligent design: the de novo engineering of proteins with specified functions.

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Review 3.  Synthetic models of the active site of catechol oxidase: mechanistic studies.

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Journal:  Nature       Date:  2008-03-19       Impact factor: 49.962

Review 5.  Protein design: a hierarchic approach.

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Journal:  Science       Date:  1995-11-10       Impact factor: 47.728

6.  Retrostructural analysis of metalloproteins: application to the design of a minimal model for diiron proteins.

Authors:  A Lombardi; C M Summa; S Geremia; L Randaccio; V Pavone; W F DeGrado
Journal:  Proc Natl Acad Sci U S A       Date:  2000-06-06       Impact factor: 11.205

7.  Spectroscopic definition of the biferrous and biferric sites in de novo designed four-helix bundle DFsc peptides: implications for O2 reactivity of binuclear non-heme iron enzymes.

Authors:  Caleb B Bell; Jennifer R Calhoun; Elena Bobyr; Pin-Pin Wei; Britt Hedman; Keith O Hodgson; William F Degrado; Edward I Solomon
Journal:  Biochemistry       Date:  2009-01-13       Impact factor: 3.162

8.  Oxygen reactivity of the biferrous site in the de novo designed four helix bundle peptide DFsc: nature of the "intermediate" and reaction mechanism.

Authors:  Jennifer R Calhoun; Caleb B Bell; Thomas J Smith; Thomas J Thamann; William F DeGrado; Edward I Solomon
Journal:  J Am Chem Soc       Date:  2008-06-24       Impact factor: 15.419

9.  Enhanced complexity and catalytic efficiency in the hydrolysis of phosphate diesters by rationally designed helix-loop-helix motifs.

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Journal:  Chembiochem       Date:  2008-08-11       Impact factor: 3.164

10.  De novo computational design of retro-aldol enzymes.

Authors:  Lin Jiang; Eric A Althoff; Fernando R Clemente; Lindsey Doyle; Daniela Röthlisberger; Alexandre Zanghellini; Jasmine L Gallaher; Jamie L Betker; Fujie Tanaka; Carlos F Barbas; Donald Hilvert; Kendall N Houk; Barry L Stoddard; David Baker
Journal:  Science       Date:  2008-03-07       Impact factor: 47.728

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  63 in total

1.  DNA targeting and cleavage by an engineered metalloprotein dimer.

Authors:  Siu Wah Wong-Deyrup; Charulata Prasannan; Cynthia M Dupureur; Sonya J Franklin
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2.  Light-driven oxygen production from superoxide by Mn-binding bacterial reaction centers.

Authors:  James P Allen; Tien L Olson; Paul Oyala; Wei-Jen Lee; Aaron A Tufts; JoAnn C Williams
Journal:  Proc Natl Acad Sci U S A       Date:  2012-01-30       Impact factor: 11.205

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Journal:  Nat Chem Biol       Date:  2015-10       Impact factor: 15.040

4.  Shaping quaternary assemblies of water-soluble non-peptide helical foldamers by sequence manipulation.

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Journal:  Nat Chem       Date:  2015-09-28       Impact factor: 24.427

5.  Designing functional metalloproteins: from structural to catalytic metal sites.

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Journal:  Coord Chem Rev       Date:  2013-09       Impact factor: 22.315

6.  Artificial Diiron Enzymes with a De Novo Designed Four-Helix Bundle Structure.

Authors:  Marco Chino; Ornella Maglio; Flavia Nastri; Vincenzo Pavone; William F DeGrado; Angela Lombardi
Journal:  Eur J Inorg Chem       Date:  2015-07-06       Impact factor: 2.524

7.  Rapid Sampling of Hydrogen Bond Networks for Computational Protein Design.

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Journal:  J Chem Theory Comput       Date:  2018-04-20       Impact factor: 6.006

8.  Systematic Perturbations of Binuclear Non-heme Iron Sites: Structure and Dioxygen Reactivity of de Novo Due Ferri Proteins.

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Journal:  Biochemistry       Date:  2015-07-24       Impact factor: 3.162

9.  Covalent Anchor Positions Play an Important Role in Tuning Catalytic Properties of a Rationally Designed MnSalen-containing Metalloenzyme.

Authors:  Dewain K Garner; Lei Liang; David A Barrios; Jun-Long Zhang; Yi Lu
Journal:  ACS Catal       Date:  2011-09-02       Impact factor: 13.084

10.  Proteins from an unevolved library of de novo designed sequences bind a range of small molecules.

Authors:  Izhack Cherny; Maria Korolev; Angela N Koehler; Michael H Hecht
Journal:  ACS Synth Biol       Date:  2012-04-02       Impact factor: 5.110

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