Literature DB >> 19905052

Lambda-prophage induction modeled as a cooperative failure mode of lytic repression.

Nicholas Chia1, Ido Golding, Nigel Goldenfeld.   

Abstract

We analyze a system-level model for lytic repression of lambda phage in E. coli using reliability theory, showing that the repressor circuit comprises four redundant components whose failure mode is prophage induction. Our model reflects the specific biochemical mechanisms involved in regulation, including long-range cooperative binding, and its detailed predictions for prophage induction in E. coli under ultraviolet radiation are in good agreement with experimental data.

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Year:  2009        PMID: 19905052      PMCID: PMC4038166          DOI: 10.1103/PhysRevE.80.030901

Source DB:  PubMed          Journal:  Phys Rev E Stat Nonlin Soft Matter Phys        ISSN: 1539-3755


  35 in total

1.  Octamerization of lambda CI repressor is needed for effective repression of P(RM) and efficient switching from lysogeny.

Authors:  I B Dodd; A J Perkins; D Tsemitsidis; J B Egan
Journal:  Genes Dev       Date:  2001-11-15       Impact factor: 11.361

2.  Stability puzzles in phage lambda.

Authors:  Erik Aurell; Stanley Brown; Johan Johanson; Kim Sneppen
Journal:  Phys Rev E Stat Nonlin Soft Matter Phys       Date:  2002-05-16

Review 3.  Are viruses driving microbial diversification and diversity?

Authors:  Markus G Weinbauer; Fereidoun Rassoulzadegan
Journal:  Environ Microbiol       Date:  2004-01       Impact factor: 5.491

4.  Genetic toggle switch without cooperative binding.

Authors:  Azi Lipshtat; Adiel Loinger; Nathalie Q Balaban; Ofer Biham
Journal:  Phys Rev Lett       Date:  2006-05-08       Impact factor: 9.161

5.  Role of the lytic repressor in prophage induction of phage lambda as analyzed by a module-replacement approach.

Authors:  Shota Atsumi; John W Little
Journal:  Proc Natl Acad Sci U S A       Date:  2006-03-14       Impact factor: 11.205

6.  Cooperativity, sensitivity, and noise in biochemical signaling.

Authors:  William Bialek; Sima Setayeshgar
Journal:  Phys Rev Lett       Date:  2008-06-23       Impact factor: 9.161

7.  The OR control system of bacteriophage lambda. A physical-chemical model for gene regulation.

Authors:  M A Shea; G K Ackers
Journal:  J Mol Biol       Date:  1985-01-20       Impact factor: 5.469

Review 8.  The SOS regulatory system of Escherichia coli.

Authors:  J W Little; D W Mount
Journal:  Cell       Date:  1982-05       Impact factor: 41.582

9.  Quantitative model for gene regulation by lambda phage repressor.

Authors:  G K Ackers; A D Johnson; M A Shea
Journal:  Proc Natl Acad Sci U S A       Date:  1982-02       Impact factor: 11.205

10.  Efficiency of induction of prophage lambda mutants as a function of recA alleles.

Authors:  M Dutreix; A Bailone; R Devoret
Journal:  J Bacteriol       Date:  1985-03       Impact factor: 3.490

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  1 in total

Review 1.  Decision making in living cells: lessons from a simple system.

Authors:  Ido Golding
Journal:  Annu Rev Biophys       Date:  2011       Impact factor: 12.981

  1 in total

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