Literature DB >> 19903758

A conserved transcriptional regulator is required for RNA-directed DNA methylation and plant development.

Xin-Jian He1, Yi-Feng Hsu, Shihua Zhu, Hai-Liang Liu, Olga Pontes, Jianhua Zhu, Xinping Cui, Co-Shine Wang, Jian-Kang Zhu.   

Abstract

RNA-directed DNA methylation (RdDM) is a conserved mechanism for epigenetic silencing of transposons and other repetitive elements. We report that the rdm4 (RNA-directed DNA Methylation4) mutation not only impairs RdDM, but also causes pleiotropic developmental defects in Arabidopsis. Both RNA polymerase II (Pol II)- and Pol V-dependent transcripts are affected in the rdm4 mutant. RDM4 encodes a novel protein that is conserved from yeast to humans and interacts with Pol II and Pol V in plants. Our results suggest that RDM4 functions in epigenetic regulation and plant development by serving as a transcriptional regulator for RNA Pol V and Pol II, respectively.

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Year:  2009        PMID： 19903758      PMCID： PMC2788325          DOI： 10.1101/gad.1851809

Source DB:  PubMed          Journal:  Genes Dev        ISSN： 0890-9369            Impact factor:   11.361


  25 in total

1.  Significance analysis of microarrays applied to the ionizing radiation response.

Authors:  V G Tusher; R Tibshirani; G Chu
Journal:  Proc Natl Acad Sci U S A       Date:  2001-04-17       Impact factor: 11.205

2.  Exploration, normalization, and summaries of high density oligonucleotide array probe level data.

Authors:  Rafael A Irizarry; Bridget Hobbs; Francois Collin; Yasmin D Beazer-Barclay; Kristen J Antonellis; Uwe Scherf; Terence P Speed
Journal:  Biostatistics       Date:  2003-04       Impact factor: 5.899

Review 3.  RNAi-mediated pathways in the nucleus.

Authors:  Marjori A Matzke; James A Birchler
Journal:  Nat Rev Genet       Date:  2005-01       Impact factor: 53.242

Review 4.  Gardening the genome: DNA methylation in Arabidopsis thaliana.

Authors:  Simon W-L Chan; Ian R Henderson; Steven E Jacobsen
Journal:  Nat Rev Genet       Date:  2005-05       Impact factor: 53.242

Review 5.  The molecular basis of eukaryotic transcription.

Authors:  Roger D Kornberg
Journal:  Proc Natl Acad Sci U S A       Date:  2007-08-01       Impact factor: 11.205

6.  The Arabidopsis cold-responsive transcriptome and its regulation by ICE1.

Authors:  Byeong-ha Lee; David A Henderson; Jian-Kang Zhu
Journal:  Plant Cell       Date:  2005-10-07       Impact factor: 11.277

7.  Efficient isolation and mapping of Arabidopsis thaliana T-DNA insert junctions by thermal asymmetric interlaced PCR.

Authors:  Y G Liu; N Mitsukawa; T Oosumi; R F Whittier
Journal:  Plant J       Date:  1995-09       Impact factor: 6.417

8.  RNA-directed de novo methylation of genomic sequences in plants.

Authors:  M Wassenegger; S Heimes; L Riedel; H L Sänger
Journal:  Cell       Date:  1994-02-11       Impact factor: 41.582

9.  Genetic analysis of osmotic and cold stress signal transduction in Arabidopsis: interactions and convergence of abscisic acid-dependent and abscisic acid-independent pathways.

Authors:  M Ishitani; L Xiong; B Stevenson; J K Zhu
Journal:  Plant Cell       Date:  1997-11       Impact factor: 11.277

10.  ROS1, a repressor of transcriptional gene silencing in Arabidopsis, encodes a DNA glycosylase/lyase.

Authors:  Zhizhong Gong; Teresa Morales-Ruiz; Rafael R Ariza; Teresa Roldán-Arjona; Lisa David; Jian Kang Zhu
Journal:  Cell       Date:  2002-12-13       Impact factor: 41.582
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  48 in total

Review 1.  Argonaute and the nuclear RNAs: new pathways for RNA-mediated control of gene expression.

Authors:  Keith T Gagnon; David R Corey
Journal:  Nucleic Acid Ther       Date:  2012-01-27       Impact factor: 5.486

2.  An atypical component of RNA-directed DNA methylation machinery has both DNA methylation-dependent and -independent roles in locus-specific transcriptional gene silencing.

Authors:  Jun Liu; Ge Bai; Cuijun Zhang; Wei Chen; Jinxing Zhou; Suwei Zhang; Qing Chen; Xin Deng; Xin-Jian He; Jian-Kang Zhu
Journal:  Cell Res       Date:  2011-11-08       Impact factor: 25.617

Review 3.  Multisubunit RNA polymerases IV and V: purveyors of non-coding RNA for plant gene silencing.

Authors:  Jeremy R Haag; Craig S Pikaard
Journal:  Nat Rev Mol Cell Biol       Date:  2011-07-22       Impact factor: 94.444

4.  RNA-directed DNA methylation in plants.

Authors:  Ali Movahedi; Weibu Sun; Jiaxin Zhang; Xiaolong Wu; Mohaddesseh Mousavi; Kourosh Mohammadi; Tongming Yin; Qiang Zhuge
Journal:  Plant Cell Rep       Date:  2015-07-17       Impact factor: 4.570

5.  Transgenic creeping bentgrass plants expressing a Picea wilsonii dehydrin gene (PicW) demonstrate improved freezing tolerance.

Authors:  Hao Zhang; Yang Shi; Xinru Liu; Ruixue Wang; Jian Li; Jichen Xu
Journal:  Mol Biol Rep       Date:  2018-08-13       Impact factor: 2.316

6.  Antisilencing role of the RNA-directed DNA methylation pathway and a histone acetyltransferase in Arabidopsis.

Authors:  Xiaojie Li; Weiqiang Qian; Yusheng Zhao; Chunlei Wang; Jie Shen; Jian-Kang Zhu; Zhizhong Gong
Journal:  Proc Natl Acad Sci U S A       Date:  2012-06-25       Impact factor: 11.205

7.  Origin, inheritance, and gene regulatory consequences of genome dominance in polyploids.

Authors:  Margaret R Woodhouse; Feng Cheng; J Chris Pires; Damon Lisch; Michael Freeling; Xiaowu Wang
Journal:  Proc Natl Acad Sci U S A       Date:  2014-03-24       Impact factor: 11.205

8.  An SGS3-like protein functions in RNA-directed DNA methylation and transcriptional gene silencing in Arabidopsis.

Authors:  Zhimin Zheng; Yu Xing; Xin-Jian He; Wenbo Li; Yuanlei Hu; Sudesh Kumar Yadav; JeeEun Oh; Jian-Kang Zhu
Journal:  Plant J       Date:  2010-01-06       Impact factor: 6.417

9.  The splicing machinery promotes RNA-directed DNA methylation and transcriptional silencing in Arabidopsis.

Authors:  Cui-Jun Zhang; Jin-Xing Zhou; Jun Liu; Ze-Yang Ma; Su-Wei Zhang; Kun Dou; Huan-Wei Huang; Tao Cai; Renyi Liu; Jian-Kang Zhu; Xin-Jian He
Journal:  EMBO J       Date:  2013-03-22       Impact factor: 11.598

10.  The de novo cytosine methyltransferase DRM2 requires intact UBA domains and a catalytically mutated paralog DRM3 during RNA-directed DNA methylation in Arabidopsis thaliana.

Authors:  Ian R Henderson; Angelique Deleris; William Wong; Xuehua Zhong; Hang Gyeong Chin; Gregory A Horwitz; Krystyna A Kelly; Sriharsa Pradhan; Steven E Jacobsen
Journal:  PLoS Genet       Date:  2010-10-28       Impact factor: 5.917
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